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InterPro: IPR008949 Terpenoid synthase

Protein matchesHelp
UniProtKB
Matches:
7964 proteins
AccessionHelp IPR008949 Terpenoid_synth
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Children IPR005630 Terpene synthase, metal-binding domain
Found in IPR000092 Polyprenyl synthetase
IPR002060 Squalene/phytoene synthase
IPR006449 Farnesyl-diphosphate farnesyltransferase
IPR010458 Trichodiene synthase
IPR014119 Heptaprenyl diphosphate synthase component II
IPR014120 Solanesyl diphosphate synthase
IPR017827 Squalene synthase HpnC
IPR017828 Squalene/phytoene synthase HpnD
Contains IPR019845 Squalene/phytoene synthase, conserved site
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Terpenoid cyclases catalyse remarkably complex cyclisation cascades that are initiated by the formation of a highly reactive carbocation in a polyisoprene substrate [1]. The pathways of monoterpene, sesquiterpene, and diterpene biosynthesis are conveniently divided into several stages [2]. The first encompasses the synthesis of isopentenyl diphosphate, isomerisation to dimethylallyl diphosphate, prenyltransferase-catalysed condensation of these two C5-units to geranyl diphosphate (GDP), and the subsequent 1'-4 additions of isopentenyl diphosphate to generate farnesyl (FDP) and geranylgeranyl (GGDP) diphosphate. In the second stage, the prenyl diphosphates undergo a range of cyclisations based on variations on the same mechanistic theme to produce the parent skeletons of each class. Thus, GDP (C10) gives rise to monoterpenes, FDP (C15) to sesquiterpenes, and GGDP (C20) to diterpenes. These transformations catalysed by the terpenoid synthases (cyclases) may be followed by a variety of redox modifications of the parent skeletal types to produce the many thousands of different terpenoid metabolites of the essential oils, turpentines, and resins of plant origin. Terpenoid synthases enzymes provide a template for binding and stabilising the flexible substrate in the precise orientation required for catalysis, trigger carbocation formation, chaperone the conformations of the reactive carbocation intermediates through a unique cyclisation sequence, and sequester and stabilise carbocations from premature quenching [1].

Structural linksHelp
PDB - click here

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR008949 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A2AIL4 UPF0551 protein C8orf38 homolog, mitochondrial

A4FVP2 (E)-beta-ocimene synthase, chloroplastic

O95749 Geranylgeranyl pyrophosphate synthetase

Q12051 Geranylgeranyl pyrophosphate synthetase

Q9VYS5 UPF0551 protein CG15738 homolog, mitochondrial

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR000092 Polyprenyl synthetase
IPR017446 Polyprenyl synthetase-related
IPR001906 Terpene synthase-like
IPR008930 Terpenoid cylases/protein prenyltransferase alpha-alpha toroid
IPR005630 Terpene synthase, metal-binding domain
IPR002060 Squalene/phytoene synthase
IPR008949 Terpenoid synthase
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain

PublicationsHelp
1. Lesburg CA, Caruthers JM, Paschall CM, Christianson DW.
Managing and manipulating carbocations in biology: terpenoid cyclase structure and mechanism.
Curr. Opin. Struct. Biol. 8 695-703 1998 [PubMed: 9914250]
http://dx.doi.org/10.1016/S0959-440X(98)80088-2
2. Bohlmann J, Meyer-Gauen G, Croteau R.
Plant terpenoid synthases: molecular biology and phylogenetic analysis.
Proc. Natl. Acad. Sci. U.S.A. 95 4126-33 1998 [PubMed: 9539701]
http://dx.doi.org/10.1073/pnas.95.8.4126

Additional ReadingHelp
Shishova EY, Yu F, Miller DJ, Faraldos JA, Zhao Y, Coates RM, Allemann RK, Cane DE, Christianson DW.
X-ray crystallographic studies of substrate binding to aristolochene synthase suggest a metal ion binding sequence for catalysis.
J. Biol. Chem. 283 2008 15431-9 [PubMed: 18385128]
http://dx.doi.org/10.1074/jbc.M800659200
Cao R, Chen CK, Guo RT, Wang AH, Oldfield E.
Structures of a potent phenylalkyl bisphosphonate inhibitor bound to farnesyl and geranylgeranyl diphosphate synthases.
Proteins 73 2008 431-9 [PubMed: 18442135]
http://dx.doi.org/10.1002/prot.22066
Shishova EY, Di Costanzo L, Cane DE, Christianson DW.
X-ray crystal structure of aristolochene synthase from Aspergillus terreus and evolution of templates for the cyclization of farnesyl diphosphate.
Biochemistry 46 2007 1941-51 [PubMed: 17261032]
http://dx.doi.org/10.1021/bi0622524
Zhang Y, Cao R, Yin F, Hudock MP, Guo RT, Krysiak K, Mukherjee S, Gao YG, Robinson H, Song Y, No JH, Bergan K, Leon A, Cass L, Goddard A, Chang TK, Lin FY, Van Beek E, Papapoulos S, Wang AH, Kubo T, Ochi M, Mukkamala D, Oldfield E.
Lipophilic bisphosphonates as dual farnesyl/geranylgeranyl diphosphate synthase inhibitors: an X-ray and NMR investigation.
J. Am. Chem. Soc. 131 2009 5153-62 [PubMed: 19309137]
http://dx.doi.org/10.1021/ja808285e
Vedula LS, Jiang J, Zakharian T, Cane DE, Christianson DW.
Structural and mechanistic analysis of trichodiene synthase using site-directed mutagenesis: probing the catalytic function of tyrosine-295 and the asparagine-225/serine-229/glutamate-233-Mg2+B motif.
Arch. Biochem. Biophys. 469 2008 184-94 [PubMed: 17996718]
http://dx.doi.org/10.1016/j.abb.2007.10.015
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InterPro 24.0