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InterPro: IPR008335 Eukaryotic molybdopterin oxidoreductase

Protein matchesHelp
UniProtKB
Matches:
1063 proteins
AccessionHelp IPR008335 Mopterin_OxRdtase_euk
SecondaryHelp IPR000572
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Children IPR012137 Nitrate reductase NADH dependent
Contains IPR000572 Oxidoreductase, molybdopterin binding
IPR005066 Moybdenum cofactor oxidoreductase, dimerisation
GO Term annotationHelp
Process GO:0055114 oxidation reduction
Function GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

A number of different eukaryotic oxidoreductases that require and bind a molybdopterin cofactor have been shown [1] to share a few regions of sequence similarity. These enzymes include xanthine dehydrogenase (EC:1.1.1.204), aldehyde oxidase (EC:1.2.3.1), nitrate reductase (EC:1.7.1.1), and sulphite oxidase (EC:1.8.3.1). The multidomain redox enzyme NAD(P)H:nitrate reductase (NR) catalyses the reduction of nitrate to nitrite in a single polypeptide electron transport chain with electron flow from NAD(P)H-FAD-cytochrome b5-molybdopterin-NO(3). Three forms of NR are known, an NADH-specific enzyme found in higher plants and algae (EC:1.7.1.1); an NAD(P)H-bispecific enzyme found in higher plants, algae and fungi (EC:1.7.1.2); and an NADPH-specific enzyme found only in fungi (EC:1.7.1.3) [2]. The mitochondrial enzyme sulphite oxidase (sulphite:ferricytochrome c oxidoreductase; EC:1.8.2.1) catalyses oxidation of sulphite to sulphate, using cytochrome c as the physiological electron acceptor. Sulphite oxidase consists of two structure/function domains, an N-terminal haem domain, similar to cytochrome b5; and a C-terminal molybdopterin domain [3].

Despite functional parallels, members of the family show no sequence similarity to the C-terminal molybdopterin domain of xanthine dehydrogenase, although xanthine dehydrogenase, nitrate reductases and sulphite oxidase all contain the eukaryotic molybdopterin oxidoreductases signature. Sequence comparison suggests that only a single Cys residue (Cys186 in chicken sulphite oxidase), is invariant in all these enzymes, indicating that it may play a role in binding molybdopterin to the protein [4, 5].

Structural linksHelp
Database linksHelp
Enzyme: EC:1.7.1
Blocks: IPB008335

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR008335 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P16081 Nitrate reductase [NADH] 1

P51687 Sulfite oxidase, mitochondrial

Q8R086 Sulfite oxidase, mitochondrial

Q9S850 Sulfite oxidase

Q9VWP4 Probable sulfite oxidase, mitochondrial

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR008333 Oxidoreductase, FAD-binding domain
IPR001834 NADH:cytochrome b5 reductase (CBR)
IPR005066 Moybdenum cofactor oxidoreductase, dimerisation
IPR001433 Oxidoreductase FAD/NAD(P)-binding
IPR017927 Ferredoxin reductase-type FAD-binding domain
IPR014756 Immunoglobulin E-set
IPR018506 Cytochrome b5, heme-binding site
IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase
IPR000572 Oxidoreductase, molybdopterin binding
IPR008335 Eukaryotic molybdopterin oxidoreductase
IPR017938 Riboflavin synthase-like beta-barrel
IPR012137 Nitrate reductase NADH dependent
IPR001199 Cytochrome b5
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Wootton JC, Nicolson RE, Cock JM, Walters DE, Burke JF, Doyle WA, Bray RC.
Enzymes depending on the pterin molybdenum cofactor: sequence families, spectroscopic properties of molybdenum and possible cofactor-binding domains.
Biochim. Biophys. Acta 1057 157-85 1991 [PubMed: 2015248]
http://dx.doi.org/10.1016/S0005-2728(05)80100-8
2. Campbell WH, Kinghorn KR.
Functional domains of assimilatory nitrate reductases and nitrite reductases.
Trends Biochem. Sci. 15 315-9 1990 [PubMed: 2204158]
http://dx.doi.org/10.1016/0968-0004(90)90021-3
3. Neame PJ, Barber MJ.
Conserved domains in molybdenum hydroxylases. The amino acid sequence of chicken hepatic sulfite oxidase.
J. Biol. Chem. 264 20894-901 1989 [PubMed: 2687265]
http://intl.jbc.org/cgi/reprint/264/35/20894.pdf
4. Barber MJ, Neame PJ.
A conserved cysteine in molybdenum oxotransferases.
J. Biol. Chem. 265 20912-5 1990 [PubMed: 2249998]
http://intl.jbc.org/cgi/content/abstract/265/34/20912
5. Garde J, Kinghorn JR, Tomsett AB.
Site-directed mutagenesis of nitrate reductase from Aspergillus nidulans. Identification of some essential and some nonessential amino acids among conserved residues.
J. Biol. Chem. 270 6644-50 1995 [PubMed: 7896804]
http://dx.doi.org/10.1074/jbc.270.12.6644

Additional ReadingHelp
Karakas E, Wilson HL, Graf TN, Xiang S, Jaramillo-Busquets S, Rajagopalan KV, Kisker C.
Structural insights into sulfite oxidase deficiency.
J. Biol. Chem. 280 2005 33506-15 [PubMed: 16048997]
http://dx.doi.org/10.1074/jbc.M505035200
Johnson JL, Rajagopalan KV.
Tryptic cleavage of rat liver sulfite oxidase. Isolation and characterization of molybdenum and heme domains.
J. Biol. Chem. 252 1977 2017-25 [PubMed: 14956]
http://intl.jbc.org/cgi/reprint/252/6/2017.pdf
Kisker C, Schindelin H, Pacheco A, Wehbi WA, Garrett RM, Rajagopalan KV, Enemark JH, Rees DC.
Molecular basis of sulfite oxidase deficiency from the structure of sulfite oxidase.
Cell 91 1997 973-83 [PubMed: 9428520]
http://dx.doi.org/10.1016/S0092-8674(00)80488-2
Schrader N, Fischer K, Theis K, Mendel RR, Schwarz G, Kisker C.
The crystal structure of plant sulfite oxidase provides insights into sulfite oxidation in plants and animals.
Structure 11 2003 1251-63 [PubMed: 14527393]
http://dx.doi.org/10.1016/j.str.2003.09.001
Meyer C, Gonneau M, Caboche M, Rouze P.
Identification by mutational analysis of four critical residues in the molybdenum cofactor domain of eukaryotic nitrate reductase.
FEBS Lett. 370 1995 197-202 [PubMed: 7656976]
http://dx.doi.org/10.1016/0014-5793(95)00827-V
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