spacer
spacer

Jump to: InterProScan Databases Documentation FTP site Help Advanced search

InterPro: IPR008263 Glycoside hydrolase, family 16, active site

Protein matchesHelp
UniProtKB
Matches:
473 proteins
AccessionHelp IPR008263 Glycoside_hydrolase_16_AS
SecondaryHelp IPR000757
TypeHelp Active_site
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR000757 Glycoside hydrolase, family 16
IPR008264 Beta-glucanase
IPR008985 Concanavalin A-like lectin/glucanase
IPR013320 Concanavalin A-like lectin/glucanase, subgroup
IPR016455 Xyloglucan endotransglucosylase/hydrolase
GO Term annotationHelp
Process GO:0005975 carbohydrate metabolic process
Function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

O-Glycosyl hydrolases EC:3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [1, 2, 3]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site [4]. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in clans.

Glycoside hydrolase family 16 GH16 comprises enzymes with a number of known activities; lichenase (EC:3.2.1.73); xyloglucan xyloglucosyltransferase (EC:2.4.1.207); agarase (EC:3.2.1.81); kappa-carrageenase (EC:3.2.1.83); endo-beta-1,3-glucanase (EC:3.2.1.39); endo-beta-1,3-1,4-glucanase (EC:3.2.1.6); endo-beta-galactosidase (EC:3.2.1.103). Two closely clustered and conserved glutamates, which are part of this signature, have been shown to be involved in the catalytic activity of Bacillus licheniformis.

Structural linksHelp
SCOP: b.29.1.2
CATH: 2.60.120.200
Database linksHelp
PDBe-motif: PS01034
CAZy: GH16
PROSITE doc: PDOC00794
Blocks: IPB008263

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR008263 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O80803 Probable xyloglucan endotransglucosylase/hydrolase protein 17

P17989 Beta-glucanase

P35694 Brassinosteroid-regulated protein BRU1

Q76BW5 Xyloglucan endotransglycosylase/hydrolase protein 8

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR016455 Xyloglucan endotransglucosylase/hydrolase
IPR013320 Concanavalin A-like lectin/glucanase, subgroup
IPR010713 Xyloglucan endo-transglycosylase, C-terminal
IPR008264 Beta-glucanase
IPR008263 Glycoside hydrolase, family 16, active site
IPR008985 Concanavalin A-like lectin/glucanase
IPR000757 Glycoside hydrolase, family 16
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G.
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases.
Proc. Natl. Acad. Sci. U.S.A. 92 7090-4 1995 [PubMed: 7624375]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=7624375&action=stream&blobtype=pdf
2. Davies G, Henrissat B.
Structures and mechanisms of glycosyl hydrolases.
Structure 3 853-9 1995 [PubMed: 8535779]
http://dx.doi.org/10.1016/S0969-2126(01)00220-9
3. Bairoch A.
Classification of glycosyl hydrolase families and index of glycosyl hydrolase entries in SWISS-PROT.
1999
4. Henrissat B, Coutinho PM.
Carbohydrate-Active Enzymes server.
1999

Additional ReadingHelp
Gaiser OJ, Piotukh K, Ponnuswamy MN, Planas A, Borriss R, Heinemann U.
Structural basis for the substrate specificity of a Bacillus 1,3-1,4-beta-glucanase.
J. Mol. Biol. 357 2006 1211-25 [PubMed: 16483609]
http://dx.doi.org/10.1016/j.jmb.2006.01.014
Michel G, Chantalat L, Duee E, Barbeyron T, Henrissat B, Kloareg B, Dideberg O.
The kappa-carrageenase of P. carrageenovora features a tunnel-shaped active site: a novel insight in the evolution of Clan-B glycoside hydrolases.
Structure 9 2001 513-25 [PubMed: 11435116]
http://dx.doi.org/10.1016/S0969-2126(01)00612-8
Johansson P, Brumer H 3rd, Baumann MJ, Kallas AM, Henriksson H, Denman SE, Teeri TT, Jones TA.
Crystal structures of a poplar xyloglucan endotransglycosylase reveal details of transglycosylation acceptor binding.
Plant Cell 16 2004 874-86 [PubMed: 15020748]
http://dx.doi.org/10.1105/tpc.020065
Tsai LC, Shyur LF, Lee SH, Lin SS, Yuan HS.
Crystal structure of a natural circularly permuted jellyroll protein: 1,3-1,4-beta-D-glucanase from Fibrobacter succinogenes.
J. Mol. Biol. 330 2003 607-20 [PubMed: 12842475]
http://dx.doi.org/10.1016/S0022-2836(03)00630-2
Juncosa M, Pons J, Dot T, Querol E, Planas A.
Identification of active site carboxylic residues in Bacillus licheniformis 1,3-1,4-beta-D-glucan 4-glucanohydrolase by site-directed mutagenesis.
J. Biol. Chem. 269 1994 14530-5 [PubMed: 8182059]
http://intl.jbc.org/cgi/content/abstract/269/20/14530
Henrissat B.
A classification of glycosyl hydrolases based on amino acid sequence similarities.
Biochem. J. 280 ( Pt 2) 1991 309-16 [PubMed: 1747104]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=1747104
Tsai LC, Shyur LF, Cheng YS, Lee SH.
Crystal structure of truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase in complex with beta-1,3-1,4-cellotriose.
J. Mol. Biol. 354 2005 642-51 [PubMed: 16246371]
http://dx.doi.org/10.1016/j.jmb.2005.09.041
spacer
spacer
InterPro 23.1