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InterPro: IPR008180 DeoxyUTP pyrophosphatase domain

Protein matchesHelp
UniProtKB
Matches:
2715 proteins
AccessionHelp IPR008180 DeoxyUTP_pyroPase_dom
SecondaryHelp IPR001428
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Children IPR008181 DeoxyUTP pyrophosphatase domain, subfamily 1,
Found in IPR011962 Deoxycytidine triphosphate deaminase
GO Term annotationHelp
Process GO:0046080 dUTP metabolic process
Function GO:0016787 hydrolase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Synonym(s): dUTP diphosphatase, Deoxyuridine-triphosphatase

The essential enzyme dUTP pyrophosphatase (EC:3.6.1.23) is specific for dUTP and is critical for the fidelity of DNA replication and repair. dUTPase hydrolyzes dUTP to dUMP and pyrophosphate, simultaneously reducing dUTP levels and providing the dUMP for dTTP biosynthesis. dUTPase decreases the intracellular concentration of dUPT so that uracil cannot be incorporated into DNA [1].

The crystal structure of human dUTPase reveals that each subunit of the dUTPase trimer folds into an eight-stranded jelly-roll beta barrel, with the C-terminal beta strands interchanged among the subunits. The structure is similar to that of the Escherichia coli enzyme, despite low sequence homology between the two enzymes [1].

Other enzymes like deoxycytidine triphosphate deaminase (dCTP) (EC:3.5.4.13) that specifically bind uridine also belong to this group suggesting that the signature may recognise a putative uridine-binding motif.

Some retroviruses encode dUTPases. Retroviral dUTPase is synthesised as part of POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, dUTPase and RNase H.

Structural linksHelp
PDB - click here
SCOP: b.85.4.1
CATH: 2.70.40.10
Database linksHelp
Enzyme: EC:3
PANDIT: PF00692
Blocks: IPB008180
Pfam Clan: CL0153.7

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR008180 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O07247 Deoxycytidine triphosphate deaminase

P03195 Deoxyuridine 5'-triphosphate nucleotidohydrolase

P33316 Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial

P33317 Deoxyuridine 5'-triphosphate nucleotidohydrolase

P70583 Deoxyuridine 5'-triphosphate nucleotidohydrolase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR011962 Deoxycytidine triphosphate deaminase
IPR008180 DeoxyUTP pyrophosphatase domain
IPR008181 DeoxyUTP pyrophosphatase domain, subfamily 1,
SWISS-MODEL
PDB Chain
ModBase
CATH Domain
SCOP Domain

PublicationsHelp
1. Mol CD, Harris JM, McIntosh EM, Tainer JA.
Human dUTP pyrophosphatase: uracil recognition by a beta hairpin and active sites formed by three separate subunits.
Structure 4 1077-92 1996 [PubMed: 8805593]
http://dx.doi.org/10.1016/S0969-2126(96)00114-1

Additional ReadingHelp
Bajaj M, Moriyama H.
Purification, crystallization and preliminary crystallographic analysis of deoxyuridine triphosphate nucleotidohydrolase from Arabidopsis thaliana.
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 63 2007 409-11 [PubMed: 17565183]
Varga B, Barabas O, Kovari J, Toth J, Hunyadi-Gulyas E, Klement E, Medzihradszky KF, Tolgyesi F, Fidy J, Vertessy BG.
Active site closure facilitates juxtaposition of reactant atoms for initiation of catalysis by human dUTPase.
FEBS Lett. 581 2007 4783-8 [PubMed: 17880943]
http://dx.doi.org/10.1016/j.febslet.2007.09.005
Kovari J, Barabas O, Varga B, Bekesi A, Tolgyesi F, Fidy J, Nagy J, Vertessy BG.
Methylene substitution at the alpha-beta bridging position within the phosphate chain of dUDP profoundly perturbs ligand accommodation into the dUTPase active site.
Proteins 71 2008 308-19 [PubMed: 17932923]
http://dx.doi.org/10.1002/prot.21757
Cedergren-Zeppezauer ES, Larsson G, Nyman PO, Dauter Z, Wilson KS.
Crystal structure of a dUTPase.
Nature 355 1992 740-3 [PubMed: 1311056]
http://dx.doi.org/10.1038/355740a0
Samal A, Schormann N, Cook WJ, DeLucas LJ, Chattopadhyay D.
Structures of vaccinia virus dUTPase and its nucleotide complexes.
Acta Crystallogr. D Biol. Crystallogr. 63 2007 571-80 [PubMed: 17452782]
http://dx.doi.org/10.1107/S0907444907007871
Whittingham JL, Leal I, Nguyen C, Kasinathan G, Bell E, Jones AF, Berry C, Benito A, Turkenburg JP, Dodson EJ, Ruiz Perez LM, Wilkinson AJ, Johansson NG, Brun R, Gilbert IH, Gonzalez Pacanowska D, Wilson KS.
dUTPase as a platform for antimalarial drug design: structural basis for the selectivity of a class of nucleoside inhibitors.
Structure 13 2005 329-38 [PubMed: 15698576]
http://dx.doi.org/10.1016/j.str.2004.11.015
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InterPro 23.1