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InterPro: IPR008180 DeoxyUTP pyrophosphatase domain
Protein matches
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UniProtKB Matches: 2715 proteins |
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Accession
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IPR008180 DeoxyUTP_pyroPase_dom |
Secondary
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IPR001428
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Type
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Domain |
Signatures
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InterPro Relationships
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Children
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IPR008181 DeoxyUTP pyrophosphatase domain, subfamily 1,
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Found in
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IPR011962 Deoxycytidine triphosphate deaminase
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GO Term annotation
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Process
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GO:0046080 dUTP metabolic process
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Function
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GO:0016787 hydrolase activity
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InterPro annotation
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Entry Details in BioMart
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Abstract
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Synonym(s): dUTP diphosphatase, Deoxyuridine-triphosphatase
The essential enzyme dUTP pyrophosphatase (EC:3.6.1.23) is specific for dUTP and is critical for the fidelity of DNA replication and repair. dUTPase hydrolyzes dUTP to dUMP and pyrophosphate, simultaneously reducing dUTP levels and providing the dUMP for dTTP biosynthesis. dUTPase decreases the intracellular concentration of dUPT so that uracil cannot be incorporated into DNA [1].
The crystal structure of human dUTPase reveals that each subunit of the dUTPase trimer folds into an eight-stranded jelly-roll beta barrel, with the C-terminal beta strands interchanged among the subunits. The structure is similar to that of the Escherichia coli enzyme, despite low sequence homology between the two enzymes [1].
Other enzymes like deoxycytidine triphosphate deaminase (dCTP) (EC:3.5.4.13) that specifically bind uridine also belong to this group suggesting that the signature may recognise a putative uridine-binding motif.
Some retroviruses encode dUTPases. Retroviral dUTPase is synthesised as part of POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, dUTPase and RNase H.
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Structural links
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Database links
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Pfam Clan: CL0153.7
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Additional Reading
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Bajaj M, Moriyama H.
Purification, crystallization and preliminary crystallographic analysis of deoxyuridine triphosphate nucleotidohydrolase from Arabidopsis thaliana.
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 63 2007 409-11
[PubMed: 17565183]
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Varga B, Barabas O, Kovari J, Toth J, Hunyadi-Gulyas E, Klement E, Medzihradszky KF, Tolgyesi F, Fidy J, Vertessy BG.
Active site closure facilitates juxtaposition of reactant atoms for initiation of catalysis by human dUTPase.
FEBS Lett. 581 2007 4783-8
[PubMed: 17880943]
http://dx.doi.org/10.1016/j.febslet.2007.09.005
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Kovari J, Barabas O, Varga B, Bekesi A, Tolgyesi F, Fidy J, Nagy J, Vertessy BG.
Methylene substitution at the alpha-beta bridging position within the phosphate chain of dUDP profoundly perturbs ligand accommodation into the dUTPase active site.
Proteins 71 2008 308-19
[PubMed: 17932923]
http://dx.doi.org/10.1002/prot.21757
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Cedergren-Zeppezauer ES, Larsson G, Nyman PO, Dauter Z, Wilson KS.
Crystal structure of a dUTPase.
Nature 355 1992 740-3
[PubMed: 1311056]
http://dx.doi.org/10.1038/355740a0
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Samal A, Schormann N, Cook WJ, DeLucas LJ, Chattopadhyay D.
Structures of vaccinia virus dUTPase and its nucleotide complexes.
Acta Crystallogr. D Biol. Crystallogr. 63 2007 571-80
[PubMed: 17452782]
http://dx.doi.org/10.1107/S0907444907007871
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Whittingham JL, Leal I, Nguyen C, Kasinathan G, Bell E, Jones AF, Berry C, Benito A, Turkenburg JP, Dodson EJ, Ruiz Perez LM, Wilkinson AJ, Johansson NG, Brun R, Gilbert IH, Gonzalez Pacanowska D, Wilson KS.
dUTPase as a platform for antimalarial drug design: structural basis for the selectivity of a class of nucleoside inhibitors.
Structure 13 2005 329-38
[PubMed: 15698576]
http://dx.doi.org/10.1016/j.str.2004.11.015
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InterPro 23.1
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