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InterPro: IPR006259 Adenylate kinase, subfamily
Protein matches
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UniProtKB Matches: 1987 proteins |
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Accession
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IPR006259 Adenyl_kin_sub |
Type
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Family |
Signatures
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InterPro Relationships
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Parent
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IPR000850 Adenylate kinase
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Contains
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IPR007862 Adenylate kinase, active site lid domain
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GO Term annotation
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Process
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GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
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Function
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GO:0005524 ATP binding
GO:0016776 phosphotransferase activity, phosphate group as acceptor
GO:0019201 nucleotide kinase activity
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InterPro annotation
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Entry Details in BioMart
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Abstract
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Most members of this family are known or believed to be adenylate kinase.
Adenylate kinase (ADK) EC:2.7.4.3 converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria).
However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC:2.7.4.10) is Q9UIJ7, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells [1] and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate [2].This family is designated subfamily rather than equivalog for this reason.
ADK has also been identified in different bacterial species and in yeast [3]. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.
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Structural links
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Database links
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Additional Reading
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Bae E, Phillips GN Jr.
Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases.
J. Biol. Chem. 279 2004 28202-8
[PubMed: 15100224]
http://dx.doi.org/10.1074/jbc.M401865200
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Berry MB, Bae E, Bilderback TR, Glaser M, Phillips GN Jr.
Crystal structure of ADP/AMP complex of Escherichia coli adenylate kinase.
Proteins 62 2006 555-6
[PubMed: 16302237]
http://dx.doi.org/10.1002/prot.20699
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Bellinzoni M, Haouz A, Grana M, Munier-Lehmann H, Shepard W, Alzari PM.
The crystal structure of Mycobacterium tuberculosis adenylate kinase in complex with two molecules of ADP and Mg2+ supports an associative mechanism for phosphoryl transfer.
Protein Sci. 15 2006 1489-93
[PubMed: 16672241]
http://dx.doi.org/10.1110/ps.062163406
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Counago R, Chen S, Shamoo Y.
In vivo molecular evolution reveals biophysical origins of organismal fitness.
Mol. Cell 22 2006 441-9
[PubMed: 16713575]
http://dx.doi.org/10.1016/j.molcel.2006.04.012
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Henzler-Wildman KA, Thai V, Lei M, Ott M, Wolf-Watz M, Fenn T, Pozharski E, Wilson MA, Petsko GA, Karplus M, Hubner CG, Kern D.
Intrinsic motions along an enzymatic reaction trajectory.
Nature 450 2007 838-44
[PubMed: 18026086]
http://dx.doi.org/10.1038/nature06410
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InterPro 23.1
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