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InterPro: IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase

Protein matchesHelp
UniProtKB
Matches:
2753 proteins
AccessionHelp IPR006095 Glu/Leu/Phe/Val_DH
SecondaryHelp IPR001625
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Children IPR014362 Glutamate dehydrogenase
IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal
Contains IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal
IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain
GO Term annotationHelp
Process GO:0006520 cellular amino acid metabolic process
GO:0055114 oxidation reduction
Function GO:0016491 oxidoreductase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.

Glutamate dehydrogenases (EC:1.4.1.2, EC:1.4.1.3, and EC:1.4.1.4) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [1, 2]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [3] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids [4].

Leucine dehydrogenase (EC:1.4.1.9) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues [5]. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle.

Phenylalanine dehydrogenase (EC:1.4.1.20) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate [6].

Valine dehydrogenase (EC:1.4.1.8) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate [7].

Structural linksHelp
SCOP: c.2.1.7 , c.58.1.1
Database linksHelp
PDBe-motif: PS00074
Enzyme: EC:1.4.1
PROSITE doc: PDOC00071
Blocks: IPB006095

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR006095 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P00367 Glutamate dehydrogenase 1, mitochondrial

P07262 NADP-specific glutamate dehydrogenase 1

P26443 Glutamate dehydrogenase 1, mitochondrial

P54385 Glutamate dehydrogenase, mitochondrial

Q38946 Glutamate dehydrogenase 2

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR016040 NAD(P)-binding domain
IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase
IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain
IPR014362 Glutamate dehydrogenase
IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. Britton KL, Baker PJ, Rice DW, Stillman TJ.
Structural relationship between the hexameric and tetrameric family of glutamate dehydrogenases.
Eur. J. Biochem. 209 851-9 1992 [PubMed: 1358610]
http://dx.doi.org/10.1111/j.1432-1033.1992.tb17357.x
2. Benachenhou-Lahfa N, Forterre P, Labedan B.
Evolution of glutamate dehydrogenase genes: evidence for two paralogous protein families and unusual branching patterns of the archaebacteria in the universal tree of life.
J. Mol. Evol. 36 335-46 1993 [PubMed: 8315654]
http://dx.doi.org/10.1007/BF00182181
3. Moye WS, Amuro N, Rao JK, Zalkin H.
Nucleotide sequence of yeast GDH1 encoding nicotinamide adenine dinucleotide phosphate-dependent glutamate dehydrogenase.
J. Biol. Chem. 260 8502-8 1985 [PubMed: 2989290]
http://intl.jbc.org/cgi/reprint/260/14/8502.pdf
4. Mavrothalassitis G, Tzimagiorgis G, Mitsialis A, Zannis V, Plaitakis A, Papamatheakis J, Moschonas N.
Isolation and characterization of cDNA clones encoding human liver glutamate dehydrogenase: evidence for a small gene family.
Proc. Natl. Acad. Sci. U.S.A. 85 3494-8 1988 [PubMed: 3368458]
http://ukpmc.ac.uk/articlerender.cgi?tool=EBI&pubmedid=3368458
5. Nagata S, Tanizawa K, Esaki N, Sakamoto Y, Ohshima T, Tanaka H, Soda K.
Gene cloning and sequence determination of leucine dehydrogenase from Bacillus stearothermophilus and structural comparison with other NAD(P)+-dependent dehydrogenases.
Biochemistry 27 9056-62 1988 [PubMed: 3069133]
http://dx.doi.org/10.1021/bi00425a026
6. Takada H, Yoshimura T, Ohshima T, Esaki N, Soda K.
Thermostable phenylalanine dehydrogenase of Thermoactinomyces intermedius: cloning, expression, and sequencing of its gene.
J. Biochem. 109 371-6 1991 [PubMed: 1880121]
http://jb.oxfordjournals.org/cgi/content/abstract/109/3/371
7. Tang L, Hutchinson CR.
Sequence, transcriptional, and functional analyses of the valine (branched-chain amino acid) dehydrogenase gene of Streptomyces coelicolor.
J. Bacteriol. 175 4176-85 1993 [PubMed: 8320231]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=8320231

Additional ReadingHelp
Nakasako M, Fujisawa T, Adachi S, Kudo T, Higuchi S.
Large-scale domain movements and hydration structure changes in the active-site cleft of unligated glutamate dehydrogenase from Thermococcus profundus studied by cryogenic X-ray crystal structure analysis and small-angle X-ray scattering.
Biochemistry 40 2001 3069-79 [PubMed: 11258921]
http://dx.doi.org/10.1021/bi002482x
Smith TJ, Schmidt T, Fang J, Wu J, Siuzdak G, Stanley CA.
The structure of apo human glutamate dehydrogenase details subunit communication and allostery.
J. Mol. Biol. 318 2002 765-77 [PubMed: 12054821]
http://dx.doi.org/10.1016/S0022-2836(02)00161-4
Smith TJ, Peterson PE, Schmidt T, Fang J, Stanley CA.
Structures of bovine glutamate dehydrogenase complexes elucidate the mechanism of purine regulation.
J. Mol. Biol. 307 2001 707-20 [PubMed: 11254391]
http://dx.doi.org/10.1006/jmbi.2001.4499
Okazaki N, Hibino Y, Asano Y, Ohmori M, Numao N, Kondo K.
Cloning and nucleotide sequencing of phenylalanine dehydrogenase gene of Bacillus sphaericus.
Gene 63 1988 337-41 [PubMed: 2838396]
http://dx.doi.org/10.1016/0378-1119(88)90537-9
Bhuiya MW, Sakuraba H, Ohshima T, Imagawa T, Katunuma N, Tsuge H.
The first crystal structure of hyperthermostable NAD-dependent glutamate dehydrogenase from Pyrobaculum islandicum.
J. Mol. Biol. 345 2005 325-37 [PubMed: 15571725]
http://dx.doi.org/10.1016/j.jmb.2004.10.063
Banerjee S, Schmidt T, Fang J, Stanley CA, Smith TJ.
Structural studies on ADP activation of mammalian glutamate dehydrogenase and the evolution of regulation.
Biochemistry 42 2003 3446-56 [PubMed: 12653548]
http://dx.doi.org/10.1021/bi0206917
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InterPro 23.1