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InterPro: IPR006066 Nitrite/sulphite reductase iron-sulphur/siroheam-binding site

Protein matchesHelp
UniProtKB
Matches:
2092 proteins
AccessionHelp IPR006066 NO2/SO3_Rdtase_FeS/sirohaem_BS
SecondaryHelp IPR000660
TypeHelp Binding_site
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR006067 Nitrite/sulphite reductase 4Fe-4S domain
IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit
IPR011787 Sulphite reductase, ferredoxin dependent
IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB
IPR014261 Sulphite reductase, subunit C
IPR017121 Nitrite reductase [NAD(P)H], large subunit
IPR017220 Sulphite reductase, assimilatory
GO Term annotationHelp
Process GO:0055114 oxidation reduction
Function GO:0016491 oxidoreductase activity
GO:0020037 heme binding
GO:0051536 iron-sulfur cluster binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Nitrite reductases and bacterial sulphite reductases catalyse the 6-electron reduction of nitrite (sulphite) to ammonia (sulphide) [1, 2]. On the basis of physiological function, 2 types of nitrite reductase can be defined: the assimilatory type, which is involved in nitrate assimilation (denitrification); and the dissimilatory type, which is responsible for nitrate respiration function. Assimilatory nitrite reductases contain a prosthetic group termed sirohaem (an iron tetra-hydroporphyrin of the isobacteriochlorin type, with 8 carboxylic acid-containing peripheral sidechains), and an iron-sulphur cluster. Similarly, there are 2 types of sulphite reductase: the assimilatory type, which participate in the synthesis of sulphur-containing compounds; and the dissimilatory type, which are terminal reductases in the reduction of sulphate. Assimilatory sulphite reductases can catalyse 6-electron reduction without the formation of free intermediates, while dissimilatory reductases can produce trithionate and thiosulphate in addition to sulphide. Both types of reductase contain sirohaem and iron-sulphur clusters [1]. A region of sequence similarity, about 80 amino acids long, is shared by assimilatory nitrite [2] and sulphite reductases [3, 4]. Four conserved Cys residues are suggested to be involved in binding the sirohaem group and/or the iron-sulphur centre [4].

Structural linksHelp
SCOP: d.134.1.1
CATH: 3.30.413.10
Database linksHelp
PDBe-motif: PS00365
PROSITE doc: PDOC00314
Blocks: IPB006066
COMe: PRX000020

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR006066 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P17846 Sulfite reductase [NADPH] hemoprotein beta-component

P47169 Sulfite reductase [NADPH] subunit beta

P72854 Sulfite reductase [ferredoxin]

Q39161 Ferredoxin--nitrite reductase, chloroplastic

Q42997 Ferredoxin--nitrite reductase, chloroplastic

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR006066 Nitrite/sulphite reductase iron-sulphur/siroheam-binding site
IPR006067 Nitrite/sulphite reductase 4Fe-4S domain
IPR011787 Sulphite reductase, ferredoxin dependent
IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit
IPR001094 Flavodoxin-like
IPR008254 Flavodoxin/nitric oxide synthase
IPR005117 Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like
IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
IPR015941 Transketolase-like, C-terminal
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Moura I, Lino AR.
Low-spin sulfite reductases.
Meth. Enzymol. 243 296-301 1994
2. Campbell WH, Kinghorn KR.
Functional domains of assimilatory nitrate reductases and nitrite reductases.
Trends Biochem. Sci. 15 315-9 1990 [PubMed: 2204158]
http://dx.doi.org/10.1016/0968-0004(90)90021-3
3. Huang CJ, Barrett EL.
Sequence analysis and expression of the Salmonella typhimurium asr operon encoding production of hydrogen sulfide from sulfite.
J. Bacteriol. 173 1544-53 1991 [PubMed: 1704886]
http://ukpmc.ac.uk/articlerender.cgi?tool=EBI&pubmedid=1704886
4. Ostrowski J, Wu JY, Rueger DC, Miller BE, Siegel LM, Kredich NM.
Characterization of the cysJIH regions of Salmonella typhimurium and Escherichia coli B. DNA sequences of cysI and cysH and a model for the siroheme-Fe4S4 active center of sulfite reductase hemoprotein based on amino acid homology with spinach nitrite reductase.
J. Biol. Chem. 264 15726-37 1989 [PubMed: 2670946]
http://intl.jbc.org/cgi/content/abstract/264/26/15726

Additional ReadingHelp
Schnell R, Sandalova T, Hellman U, Lindqvist Y, Schneider G.
Siroheme- and [Fe4-S4]-dependent NirA from Mycobacterium tuberculosis is a sulfite reductase with a covalent Cys-Tyr bond in the active site.
J. Biol. Chem. 280 2005 27319-28 [PubMed: 15917234]
http://dx.doi.org/10.1074/jbc.M502560200
Swamy U, Wang M, Tripathy JN, Kim SK, Hirasawa M, Knaff DB, Allen JP.
Structure of spinach nitrite reductase: implications for multi-electron reactions by the iron-sulfur:siroheme cofactor.
Biochemistry 44 2005 16054-63 [PubMed: 16331965]
http://dx.doi.org/10.1021/bi050981y
Crane BR, Siegel LM, Getzoff ED.
Structures of the siroheme- and Fe4S4-containing active center of sulfite reductase in different states of oxidation: heme activation via reduction-gated exogenous ligand exchange.
Biochemistry 36 1997 12101-19 [PubMed: 9315848]
http://dx.doi.org/10.1021/bi971065q
Gisselmann G, Klausmeier P, Schwenn JD.
The ferredoxin:sulphite reductase gene from Synechococcus PCC7942.
Biochim. Biophys. Acta 1144 1993 102-6 [PubMed: 8347657]
http://dx.doi.org/10.1016/0005-2728(93)90037-G
Crane BR, Siegel LM, Getzoff ED.
Sulfite reductase structure at 1.6 A: evolution and catalysis for reduction of inorganic anions.
Science 270 1995 59-67 [PubMed: 7569952]
http://www.sciencemag.org/cgi/content/abstract/270/5233/59
Crane BR, Siegel LM, Getzoff ED.
Probing the catalytic mechanism of sulfite reductase by X-ray crystallography: structures of the Escherichia coli hemoprotein in complex with substrates, inhibitors, intermediates, and products.
Biochemistry 36 1997 12120-37 [PubMed: 9315849]
http://dx.doi.org/10.1021/bi971066i
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InterPro 23.1