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InterPro: IPR006035 Ureohydrolase

Protein matchesHelp
UniProtKB
Matches:
2569 proteins
AccessionHelp IPR006035 Ureohydrolase
SecondaryHelp IPR000287
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Children IPR005923 Formiminoglutamase
IPR005924 Arginase
IPR005925 Putative agmatinase
Contains IPR020855 Ureohydrolase, manganese-binding site
GO Term annotationHelp
Function GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0046872 metal ion binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The ureohydrolase superfamily includes arginase (EC:3.5.3.1), agmatinase (EC:3.5.3.11), formiminoglutamase (EC:3.5.3.8) and proclavaminate amidinohydrolase (EC:3.5.3.22) [1]. These enzymes share a 3-layer alpha-beta-alpha structure [1, 2, 3], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways.

Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion [4]. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia.

Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals.

Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide.

Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [3].

Structural linksHelp
PDB - click here
SCOP: c.42.1.1
CATH: 3.40.800.10
Database linksHelp
PDBe-motif: PS00147 , PS00148 , PS01053
Enzyme: EC:3.5.3
PROSITE doc: PDOC00135
PANDIT: PF00491
Blocks: IPB006035
Pfam Clan: CL0302.2

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR006035 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A2AS89 Agmatinase, mitochondrial

P00812 Arginase

P05089 Arginase-1

P46637 Arginase

P72703 Agmatinase 1

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR014033 Arginase, subgroup
IPR006035 Ureohydrolase
IPR020855 Ureohydrolase, manganese-binding site
IPR005924 Arginase
IPR005925 Putative agmatinase
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. Ahn HJ, Kim KH, Lee J, Ha JY, Lee HH, Kim D, Yoon HJ, Kwon AR, Suh SW.
Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily.
J. Biol. Chem. 279 50505-13 2004 [PubMed: 15355972]
http://dx.doi.org/10.1074/jbc.M409246200
2. Di Costanzo L, Sabio G, Mora A, Rodriguez PC, Ochoa AC, Centeno F, Christianson DW.
Crystal structure of human arginase I at 1.29-A resolution and exploration of inhibition in the immune response.
Proc. Natl. Acad. Sci. U.S.A. 102 13058-63 2005 [PubMed: 16141327]
http://dx.doi.org/10.1073/pnas.0504027102
3. Elkins JM, Clifton IJ, Hernandez H, Doan LX, Robinson CV, Schofield CJ, Hewitson KS.
Oligomeric structure of proclavaminic acid amidino hydrolase: evolution of a hydrolytic enzyme in clavulanic acid biosynthesis.
Biochem. J. 366 423-34 2002 [PubMed: 12020346]
http://dx.doi.org/10.1042/BJ20020125
4. Xu Q, Baker BS, Tata JR.
Developmental and hormonal regulation of the Xenopus liver-type arginase gene.
Eur. J. Biochem. 211 891-8 1993 [PubMed: 7916684]
http://dx.doi.org/10.1111/j.1432-1033.1993.tb17622.x

Additional ReadingHelp
Colleluori DM, Reczkowski RS, Emig FA, Cama E, Cox JD, Scolnick LR, Compher K, Jude K, Han S, Viola RE, Christianson DW, Ash DE.
Probing the role of the hyper-reactive histidine residue of arginase.
Arch. Biochem. Biophys. 444 2005 15-26 [PubMed: 16266687]
http://dx.doi.org/10.1016/j.abb.2005.09.009
Di Costanzo L, Pique ME, Christianson DW.
Crystal structure of human arginase I complexed with thiosemicarbazide reveals an unusual thiocarbonyl mu-sulfide ligand in the binuclear manganese cluster.
J. Am. Chem. Soc. 129 2007 6388-9 [PubMed: 17469833]
http://dx.doi.org/10.1021/ja071567j
Di Costanzo L, Moulin M, Haertlein M, Meilleur F, Christianson DW.
Expression, purification, assay, and crystal structure of perdeuterated human arginase I.
Arch. Biochem. Biophys. 465 2007 82-9 [PubMed: 17562323]
http://dx.doi.org/10.1016/j.abb.2007.04.036
Zakharian TY, Di Costanzo L, Christianson DW.
Synthesis of (2S)-2-amino-7,8-epoxyoctanoic acid and structure of its metal-bridging complex with human arginase I.
Org. Biomol. Chem. 6 2008 3240-3 [PubMed: 18802628]
http://dx.doi.org/10.1039/b811797g
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InterPro 23.1