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InterPro: IPR005833 Haloacid dehydrogenase/epoxide hydrolase

Protein matchesHelp
UniProtKB
Matches:
5608 proteins
AccessionHelp IPR005833 Haloacid_DH/epoxide_hydro
SecondaryHelp IPR001454
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Children IPR006388 HAD-superfamily hydrolase, subfamily IA, variant 2
Contains IPR011945 Predicted HAD-superfamily phosphatase, subfamily IA/Epoxide hydrolase, N-terminal
GO Term annotationHelp
Process GO:0008152 metabolic process
Function GO:0016787 hydrolase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Microorganisms that can utilise halogenated compounds as growth substrates produce enzymes that cleave carbon-halogen bonds and are commonly called dehalogenases. The hydrolytic dehalogenases catalyse a nucleophilic displacement reaction, with water as the sole co-substrate [1]. They are divided into haloalkane dehalogenases and haloacid dehalogenases (HAD). HADs belong to a large superfamily of hydrolases with diverse substrate specificity, which also includes epoxide hydrolases, phosphoglycolate phosphatases, histidinol phosphate phosphatases, nitrophenyl phosphatases and numerous putative (not yet characterised) proteins [2]. The epoxide hydrolases (EH) add water to epoxides, forming the corresponding diol.

The mammalian soluble EHs may contain two evolutionarily distinct domains [3]. The N-terminal domain is similar to bacterial HADs; the C-terminal domain is similar to soluble plant EH, microsomal EH, and bacterial haloalkane dehalogenase.

Structural linksHelp
Database linksHelp
Enzyme: EC:3
Blocks: IPB005833

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR005833 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O59346 Uncharacterized HAD-hydrolase PH1655

O67359 Phosphoglycolate phosphatase

Q5E9D6 Haloacid dehalogenase-like hydrolase domain-containing protein 3

Q8TBE9 N-acylneuraminate-9-phosphatase

Q9CPT3 N-acylneuraminate-9-phosphatase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR006439 HAD-superfamily hydrolase, subfamily IA, variant 1
IPR006402 HAD-superfamily hydrolase, subfamily IA, variant 3
IPR005834 Haloacid dehalogenase-like hydrolase
IPR005833 Haloacid dehydrogenase/epoxide hydrolase
IPR011950 HAD-superfamily hydrolase, subfamily IA, CTE7
IPR011949 HAD-superfamily hydrolase, subfamily IA, REG-2-like
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. Janssen DB, Pries F, van der Ploeg JR.
Genetics and biochemistry of dehalogenating enzymes.
Annu. Rev. Microbiol. 48 163-91 1994 [PubMed: 7826004]
http://dx.doi.org/10.1146/annurev.mi.48.100194.001115
2. Koonin EV, Tatusov RL.
Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database search.
J. Mol. Biol. 244 125-32 1994 [PubMed: 7966317]
http://dx.doi.org/10.1006/jmbi.1994.1711
3. Beetham JK, Grant D, Arand M, Garbarino J, Kiyosue T, Pinot F, Oesch F, Belknap WR, Shinozaki K, Hammock BD.
Gene evolution of epoxide hydrolases and recommended nomenclature.
DNA Cell Biol. 14 61-71 1995 [PubMed: 7832993]

Additional ReadingHelp
Zhang G, Dai J, Wang L, Dunaway-Mariano D, Tremblay LW, Allen KN.
Catalytic cycling in beta-phosphoglucomutase: a kinetic and structural analysis.
Biochemistry 44 2005 9404-16 [PubMed: 15996095]
http://dx.doi.org/10.1021/bi050558p
Myers RW, Wray JW, Fish S, Abeles RH.
Purification and characterization of an enzyme involved in oxidative carbon-carbon bond cleavage reactions in the methionine salvage pathway of Klebsiella pneumoniae.
J. Biol. Chem. 268 1993 24785-91 [PubMed: 8227039]
http://intl.jbc.org/cgi/content/abstract/268/33/24785
Tremblay LW, Zhang G, Dai J, Dunaway-Mariano D, Allen KN.
Chemical confirmation of a pentavalent phosphorane in complex with beta-phosphoglucomutase.
J. Am. Chem. Soc. 127 2005 5298-9 [PubMed: 15826149]
http://dx.doi.org/10.1021/ja0509073
Arai R, Kukimoto-Niino M, Kuroishi C, Bessho Y, Shirouzu M, Yokoyama S.
Crystal structure of the probable haloacid dehalogenase PH0459 from Pyrococcus horikoshii OT3.
Protein Sci. 15 2006 373-7 [PubMed: 16385007]
http://dx.doi.org/10.1110/ps.051922406
Schmidberger JW, Wilce JA, Tsang JS, Wilce MC.
Crystal structures of the substrate free-enzyme, and reaction intermediate of the HAD superfamily member, haloacid dehalogenase DehIVa from Burkholderia cepacia MBA4.
J. Mol. Biol. 368 2007 706-17 [PubMed: 17368477]
http://dx.doi.org/10.1016/j.jmb.2007.02.015
Lahiri SD, Zhang G, Dunaway-Mariano D, Allen KN.
The pentacovalent phosphorus intermediate of a phosphoryl transfer reaction.
Science 299 2003 2067-71 [PubMed: 12637673]
http://dx.doi.org/10.1126/science.1082710
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InterPro 23.1