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InterPro: IPR005833 Haloacid dehydrogenase/epoxide hydrolase
Protein matches
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UniProtKB Matches: 5608 proteins |
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Accession
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IPR005833 Haloacid_DH/epoxide_hydro |
Secondary
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IPR001454
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Type
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Family |
Signatures
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InterPro Relationships
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Children
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IPR006388 HAD-superfamily hydrolase, subfamily IA, variant 2
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Contains
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IPR011945 Predicted HAD-superfamily phosphatase, subfamily IA/Epoxide hydrolase, N-terminal
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GO Term annotation
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Process
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GO:0008152 metabolic process
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Function
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GO:0016787 hydrolase activity
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InterPro annotation
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Entry Details in BioMart
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Abstract
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Microorganisms that can utilise halogenated compounds as growth substrates
produce enzymes that cleave carbon-halogen bonds and are commonly called
dehalogenases. The hydrolytic dehalogenases catalyse a nucleophilic
displacement reaction, with water as the sole co-substrate [1]. They are
divided into haloalkane dehalogenases and haloacid dehalogenases (HAD).
HADs belong to a large superfamily of hydrolases with diverse substrate
specificity, which also includes epoxide hydrolases, phosphoglycolate
phosphatases, histidinol phosphate phosphatases, nitrophenyl phosphatases
and numerous putative (not yet characterised) proteins [2].
The epoxide hydrolases (EH) add water to epoxides, forming the corresponding
diol.
The
mammalian soluble EHs may contain two evolutionarily distinct domains [3]. The
N-terminal domain is similar to bacterial HADs; the C-terminal domain is
similar to soluble plant EH, microsomal EH, and bacterial haloalkane
dehalogenase.
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Structural links
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Database links
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Publications
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1.
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Janssen DB, Pries F, van der Ploeg JR.
Genetics and biochemistry of dehalogenating enzymes.
Annu. Rev. Microbiol. 48 163-91 1994
[PubMed: 7826004]
http://dx.doi.org/10.1146/annurev.mi.48.100194.001115
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2.
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Koonin EV, Tatusov RL.
Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database search.
J. Mol. Biol. 244 125-32 1994
[PubMed: 7966317]
http://dx.doi.org/10.1006/jmbi.1994.1711
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3.
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Beetham JK, Grant D, Arand M, Garbarino J, Kiyosue T, Pinot F, Oesch F, Belknap WR, Shinozaki K, Hammock BD.
Gene evolution of epoxide hydrolases and recommended nomenclature.
DNA Cell Biol. 14 61-71 1995
[PubMed: 7832993]
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Additional Reading
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Zhang G, Dai J, Wang L, Dunaway-Mariano D, Tremblay LW, Allen KN.
Catalytic cycling in beta-phosphoglucomutase: a kinetic and structural analysis.
Biochemistry 44 2005 9404-16
[PubMed: 15996095]
http://dx.doi.org/10.1021/bi050558p
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Myers RW, Wray JW, Fish S, Abeles RH.
Purification and characterization of an enzyme involved in oxidative carbon-carbon bond cleavage reactions in the methionine salvage pathway of Klebsiella pneumoniae.
J. Biol. Chem. 268 1993 24785-91
[PubMed: 8227039]
http://intl.jbc.org/cgi/content/abstract/268/33/24785
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Tremblay LW, Zhang G, Dai J, Dunaway-Mariano D, Allen KN.
Chemical confirmation of a pentavalent phosphorane in complex with beta-phosphoglucomutase.
J. Am. Chem. Soc. 127 2005 5298-9
[PubMed: 15826149]
http://dx.doi.org/10.1021/ja0509073
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Arai R, Kukimoto-Niino M, Kuroishi C, Bessho Y, Shirouzu M, Yokoyama S.
Crystal structure of the probable haloacid dehalogenase PH0459 from Pyrococcus horikoshii OT3.
Protein Sci. 15 2006 373-7
[PubMed: 16385007]
http://dx.doi.org/10.1110/ps.051922406
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Schmidberger JW, Wilce JA, Tsang JS, Wilce MC.
Crystal structures of the substrate free-enzyme, and reaction intermediate of the HAD superfamily member, haloacid dehalogenase DehIVa from Burkholderia cepacia MBA4.
J. Mol. Biol. 368 2007 706-17
[PubMed: 17368477]
http://dx.doi.org/10.1016/j.jmb.2007.02.015
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Lahiri SD, Zhang G, Dunaway-Mariano D, Allen KN.
The pentacovalent phosphorus intermediate of a phosphoryl transfer reaction.
Science 299 2003 2067-71
[PubMed: 12637673]
http://dx.doi.org/10.1126/science.1082710
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InterPro 23.1
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