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InterPro: IPR005814 Aminotransferase class-III

Protein matchesHelp
UniProtKB
Matches:
9708 proteins
AccessionHelp IPR005814 Aminotrans_3
SecondaryHelp IPR000954
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Children IPR004631 4-aminobutyrate aminotransferase, eukaryotic
IPR004632 4-aminobutyrate aminotransferase, bacterial
IPR004636 Acetylornithine/succinylornithine aminotransferase
IPR004637 Diaminobutyrate-2-oxoglutarate transaminase
IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase
IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase
IPR010164 Ornithine aminotransferase
IPR017657 L-lysine 6-transaminase
Contains IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR015424 Pyridoxal phosphate-dependent transferase, major domain
GO Term annotationHelp
Function GO:0008483 transaminase activity
GO:0030170 pyridoxal phosphate binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [1] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (EC:2.6.1.11), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (EC:2.6.1.13), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (EC:2.6.1.18), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (EC:2.6.1.19) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (EC:2.6.1.62), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (EC:4.1.1.64), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.

Structural linksHelp
PDB - click here
SCOP: c.67.1.4
Database linksHelp
PDBe-motif: PS00600
PROSITE doc: PDOC00519
PANDIT: PF00202
Blocks: IPB005814
Pfam Clan: CL0061.9

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR005814 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P04181 Ornithine aminotransferase, mitochondrial

P07991 Ornithine aminotransferase

P29758 Ornithine aminotransferase, mitochondrial

P91408 Alanine--glyoxylate aminotransferase 2-like

Q9VU95 Alanine--glyoxylate aminotransferase 2-like

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR005814 Aminotransferase class-III
IPR010164 Ornithine aminotransferase
IPR015424 Pyridoxal phosphate-dependent transferase, major domain
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
SWISS-MODEL
PDB Chain
ModBase
CATH Domain
SCOP Domain

PublicationsHelp
1. Yonaha K, Nishie M, Aibara S.
The primary structure of omega-amino acid:pyruvate aminotransferase.
J. Biol. Chem. 267 12506-10 1992 [PubMed: 1618757]
http://intl.jbc.org/cgi/reprint/267/18/12506.pdf

Additional ReadingHelp
Stetefeld J, Jenny M, Burkhard P.
Intersubunit signaling in glutamate-1-semialdehyde-aminomutase.
Proc. Natl. Acad. Sci. U.S.A. 103 2006 13688-93 [PubMed: 16954186]
http://dx.doi.org/10.1073/pnas.0600306103
Liu W, Peterson PE, Langston JA, Jin X, Zhou X, Fisher AJ, Toney MD.
Kinetic and crystallographic analysis of active site mutants of Escherichia coli gamma-aminobutyrate aminotransferase.
Biochemistry 44 2005 2982-92 [PubMed: 15723541]
http://dx.doi.org/10.1021/bi048657a
Schulze JO, Schubert WD, Moser J, Jahn D, Heinz DW.
Evolutionary relationship between initial enzymes of tetrapyrrole biosynthesis.
J. Mol. Biol. 358 2006 1212-20 [PubMed: 16564539]
http://dx.doi.org/10.1016/j.jmb.2006.02.064
Vedadi M, Lew J, Artz J, Amani M, Zhao Y, Dong A, Wasney GA, Gao M, Hills T, Brokx S, Qiu W, Sharma S, Diassiti A, Alam Z, Melone M, Mulichak A, Wernimont A, Bray J, Loppnau P, Plotnikova O, Newberry K, Sundararajan E, Houston S, Walker J, Tempel W, Bochkarev A, Kozieradzki I, Edwards A, Arrowsmith C, Roos D, Kain K, Hui R.
Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms.
Mol. Biochem. Parasitol. 151 2007 100-10 [PubMed: 17125854]
http://dx.doi.org/10.1016/j.molbiopara.2006.10.011
Shen BW, Hennig M, Hohenester E, Jansonius JN, Schirmer T.
Crystal structure of human recombinant ornithine aminotransferase.
J. Mol. Biol. 277 1998 81-102 [PubMed: 9514741]
http://dx.doi.org/10.1006/jmbi.1997.1583
Rajaram V, Ratna Prasuna P, Savithri HS, Murthy MR.
Structure of biosynthetic N-acetylornithine aminotransferase from Salmonella typhimurium: studies on substrate specificity and inhibitor binding.
Proteins 70 2008 429-41 [PubMed: 17680699]
http://dx.doi.org/10.1002/prot.21567
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InterPro 23.1