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InterPro: IPR005477 Deoxyxylulose-5-phosphate synthase

Protein matchesHelp
UniProtKB
Matches:
1455 proteins
AccessionHelp IPR005477 Dxylulose-5-P_synthase
SecondaryHelp IPR000360
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Contains IPR005474 Transketolase, N-terminal
IPR005475 Transketolase-like, pyrimidine-binding domain
IPR005476 Transketolase, C-terminal
IPR020826 Transketolase binding site
GO Term annotationHelp
Process GO:0016114 terpenoid biosynthetic process
Function GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity
InterPro annotation
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AbstractHelp

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. DXP synthase is found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis [1]. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding [1]. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 EC:1.2.4.4. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.

Database linksHelp
Enzyme: EC:2.2.1.7

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR005477 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A2BR27 1-deoxy-D-xylulose-5-phosphate synthase

O22567 Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

P73067 1-deoxy-D-xylulose-5-phosphate synthase

P77488 1-deoxy-D-xylulose-5-phosphate synthase

Q38854 Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR020826 Transketolase binding site
IPR005474 Transketolase, N-terminal
IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
IPR005476 Transketolase, C-terminal
IPR005475 Transketolase-like, pyrimidine-binding domain
IPR005477 Deoxyxylulose-5-phosphate synthase
IPR015941 Transketolase-like, C-terminal
SWISS-MODEL
PDB Chain
ModBase

PublicationsHelp
1. Lindqvist Y, Schneider G, Ermler U, Sundstrom M.
Three-dimensional structure of transketolase, a thiamine diphosphate dependent enzyme, at 2.5 A resolution.
EMBO J. 11 2373-9 1992 [PubMed: 1628611]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=1628611

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InterPro 23.1