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InterPro: IPR005323 Bacterial pullanase-associated protein

Protein matches Help

UniProtKB

Matches:

251 proteins

Overview:	sorted by AC,	sorted by name,	of known structure,	proteins with splice variants
Detailed:	sorted by AC,	sorted by name,	of known structure	proteins with splice variants
Table:	For all matching proteins,	of known structure
Architectures
Accession List
Matches in BioMart

Accession

IPR005323 PUD

Type

Domain

Signatures Help

Database	ID	Name	Proteins
Pfam	PF03714	PUD	251
Signatures in BioMart

InterPro Relationships Help

Found in

IPR011838 Pullulanase, extracellular

GO Term annotation Help

Process

GO:0005975 carbohydrate metabolic process

Function

GO:0030246 carbohydrate binding

InterPro annotation

Entry Details in BioMart

Abstract

Domain is found in pullanase - carbohydrate de-branching - proteins. It is found both to the N or the C-termini of of the alpha-amylase active site region. This domain contains several conserved aromatic residues that are suggestive of a carbohydrate binding function.

Structural links Help

PDB - click here

SCOP: b.1.18.2 , b.3.1.3

Database links Help

Enzyme: EC:3.2.1

PANDIT: PF03714

Blocks: IPB005323

Taxonomic coverage Help

Overlapping InterPro entries Help

IPR005323

Numbers of overlapping proteins

Average numbers of overlapping amino acids

Example proteins Help

O33840 Pullulanase

More proteins

Example Proteins Key

InterPro entry accession number/name and structure databases		Colour code
IPR011840	Pullulanase, type I
IPR013781	Glycoside hydrolase, subgroup, catalytic core
IPR013783	Immunoglobulin-like fold
IPR006047	Glycosyl hydrolase, family 13, catalytic domain
IPR005323	Bacterial pullanase-associated protein
IPR006048	Alpha-amylase, C-terminal all beta
IPR017853	Glycoside hydrolase, catalytic core
IPR004193	Glycoside hydrolase, family 13, N-terminal
	SWISS-MODEL
	PDB Chain
	ModBase
	SCOP Domain

Publications Help

Additional Reading Open in usermanual
	Yeats C, Bentley S, Bateman A. New knowledge from old: in silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol. 3 2003 3 [PubMed: 12625841] http://dx.doi.org/10.1186/1471-2180-3-3
	van Bueren AL, Boraston AB. The structural basis of alpha-glucan recognition by a family 41 carbohydrate-binding module from Thermotoga maritima. J. Mol. Biol. 365 2007 555-60 [PubMed: 17095014] http://dx.doi.org/10.1016/j.jmb.2006.10.018
	Mikami B, Iwamoto H, Malle D, Yoon HJ, Demirkan-Sarikaya E, Mezaki Y, Katsuya Y. Crystal structure of pullulanase: evidence for parallel binding of oligosaccharides in the active site. J. Mol. Biol. 359 2006 690-707 [PubMed: 16650854] http://dx.doi.org/10.1016/j.jmb.2006.03.058
	van Bueren AL, Higgins M, Wang D, Burke RD, Boraston AB. Identification and structural basis of binding to host lung glycogen by streptococcal virulence factors. Nat. Struct. Mol. Biol. 14 2007 76-84 [PubMed: 17187076] http://dx.doi.org/10.1038/nsmb1187

InterPro 23.1