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InterPro: IPR005066 Moybdenum cofactor oxidoreductase, dimerisation

Protein matchesHelp
UniProtKB
Matches:
1234 proteins
AccessionHelp IPR005066 MoCF_OxRdtse_dimer
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR014756 Immunoglobulin E-set
Found in IPR008335 Eukaryotic molybdopterin oxidoreductase
IPR012137 Nitrate reductase NADH dependent
GO Term annotationHelp
Process GO:0055114 oxidation reduction
Function GO:0016491 oxidoreductase activity
GO:0030151 molybdenum ion binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [1, 2].

In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner [3]. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF [4]. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205) [5].

This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine [6]. This domain is involved in dimer formation, and has an Ig-fold structure [6].

Structural linksHelp
Database linksHelp
Enzyme: EC:1.7.1
PANDIT: PF03404

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR005066 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P16081 Nitrate reductase [NADH] 1

P51687 Sulfite oxidase, mitochondrial

Q8R086 Sulfite oxidase, mitochondrial

Q9S850 Sulfite oxidase

Q9VWP4 Probable sulfite oxidase, mitochondrial

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR008333 Oxidoreductase, FAD-binding domain
IPR001834 NADH:cytochrome b5 reductase (CBR)
IPR005066 Moybdenum cofactor oxidoreductase, dimerisation
IPR001433 Oxidoreductase FAD/NAD(P)-binding
IPR017927 Ferredoxin reductase-type FAD-binding domain
IPR014756 Immunoglobulin E-set
IPR018506 Cytochrome b5, heme-binding site
IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase
IPR000572 Oxidoreductase, molybdopterin binding
IPR008335 Eukaryotic molybdopterin oxidoreductase
IPR017938 Riboflavin synthase-like beta-barrel
IPR012137 Nitrate reductase NADH dependent
IPR001199 Cytochrome b5
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Mendel RR, Bittner F.
Cell biology of molybdenum.
Biochim. Biophys. Acta 1763 621-35 2006 [PubMed: 16784786]
http://dx.doi.org/10.1016/j.bbamcr.2006.03.013
2. Hille R.
Molybdenum and tungsten in biology.
Trends Biochem. Sci. 27 360-7 2002 [PubMed: 12114025]
http://dx.doi.org/10.1016/S0968-0004(02)02107-2
3. Nichols JD, Xiang S, Schindelin H, Rajagopalan KV.
Mutational analysis of Escherichia coli MoeA: two functional activities map to the active site cleft.
Biochemistry 46 78-86 2007 [PubMed: 17198377]
http://dx.doi.org/10.1021/bi061551q
4. Magalon A, Frixon C, Pommier J, Giordano G, Blasco F.
In vivo interactions between gene products involved in the final stages of molybdenum cofactor biosynthesis in Escherichia coli.
J. Biol. Chem. 277 48199-204 2002 [PubMed: 12372836]
http://dx.doi.org/10.1074/jbc.M205806200
5. Stallmeyer B, Nerlich A, Schiemann J, Brinkmann H, Mendel RR.
Molybdenum co-factor biosynthesis: the Arabidopsis thaliana cDNA cnx1 encodes a multifunctional two-domain protein homologous to a mammalian neuroprotein, the insect protein Cinnamon and three Escherichia coli proteins.
Plant J. 8 751-62 1995 [PubMed: 8528286]
http://dx.doi.org/10.1046/j.1365-313X.1995.08050751.x
6. Kisker C, Schindelin H, Pacheco A, Wehbi WA, Garrett RM, Rajagopalan KV, Enemark JH, Rees DC.
Molecular basis of sulfite oxidase deficiency from the structure of sulfite oxidase.
Cell 91 973-83 1997 [PubMed: 9428520]
http://dx.doi.org/10.1016/S0092-8674(00)80488-2

Additional ReadingHelp
Karakas E, Wilson HL, Graf TN, Xiang S, Jaramillo-Busquets S, Rajagopalan KV, Kisker C.
Structural insights into sulfite oxidase deficiency.
J. Biol. Chem. 280 2005 33506-15 [PubMed: 16048997]
http://dx.doi.org/10.1074/jbc.M505035200
Schrader N, Fischer K, Theis K, Mendel RR, Schwarz G, Kisker C.
The crystal structure of plant sulfite oxidase provides insights into sulfite oxidation in plants and animals.
Structure 11 2003 1251-63 [PubMed: 14527393]
http://dx.doi.org/10.1016/j.str.2003.09.001
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InterPro 24.0