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InterPro: IPR004536 Selenide water dikinase

Protein matchesHelp
UniProtKB
Matches:
754 proteins
AccessionHelp IPR004536 SelD
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Contains IPR000728 AIR synthase related protein
IPR010918 AIR synthase related protein, C-terminal
GO Term annotationHelp
Function GO:0004756 selenide, water dikinase activity
GO:0005524 ATP binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide, water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence scoring above the trusted cut-off but not aligning to the beginning of the HMM is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence.

Structural linksHelp
Database linksHelp
Enzyme: EC:2.7.9.3

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR004536 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O18373 Selenide, water dikinase

O62461 Probable selenide, water dikinase

O67139 Selenide, water dikinase

P49903 Selenide, water dikinase 1

P97364 Selenide, water dikinase 2

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR010918 AIR synthase related protein, C-terminal
IPR004536 Selenide water dikinase
IPR000728 AIR synthase related protein
IPR016188 PurM, N-terminal-like
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain

PublicationsHelp

Additional ReadingHelp
Matsumoto E, Sekine SI, Akasaka R, Otta Y, Katsura K, Inoue M, Kaminishi T, Terada T, Shirouzu M, Yokoyama S.
Structure of an N-terminally truncated selenophosphate synthetase from Aquifex aeolicus.
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 64 2008 453-8 [PubMed: 18540050]
Itoh Y, Sekine S, Matsumoto E, Akasaka R, Takemoto C, Shirouzu M, Yokoyama S.
Structure of selenophosphate synthetase essential for selenium incorporation into proteins and RNAs.
J. Mol. Biol. 385 2009 1456-69 [PubMed: 18773910]
http://dx.doi.org/10.1016/j.jmb.2008.08.042
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InterPro 23.1