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InterPro: IPR003962 Fibronectin, type III subdomain
Protein matches
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UniProtKB Matches: 784 proteins |
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Accession
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IPR003962 FnIII_subd |
Secondary
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IPR001777
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Type
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Domain |
Signatures
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InterPro Relationships
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Parent
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IPR003961 Fibronectin, type III
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Found in
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IPR012013 Integrin beta-4 subunit
IPR016257 Tyrosine-protein kinase, ephrin receptor
IPR020767 Tyrosine-protein kinase, ephrin B6 receptor
IPR020768 Tyrosine-protein kinase, ephrin A receptor
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InterPro annotation
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Entry Details in BioMart
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Abstract
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Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes [1]. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis [2]. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [3], although related sequences can also display cell adhesion activity.
Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene [1]. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure [4].
The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface [1]. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.
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Structural links
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Database links
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Example proteins
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P10586 Receptor-type tyrosine-protein phosphatase F
P16621 Tyrosine-protein phosphatase Lar
P27050 Chitinase D
P54763 Ephrin type-B receptor 2
Q9BMN8 Tyrosine-protein phosphatase Lar-like
More proteins
Example Proteins Key
| InterPro entry accession number/name and structure databases |
Colour code |
| IPR013781 |
Glycoside hydrolase, subgroup, catalytic core |
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| IPR013783 |
Immunoglobulin-like fold |
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| IPR017441 |
Protein kinase, ATP binding site |
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| IPR015520 |
Imaginal disc growth factor |
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| IPR013761 |
Sterile alpha motif-type |
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| IPR013098 |
Immunoglobulin I-set |
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| IPR016130 |
Protein-tyrosine phosphatase, active site |
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| IPR001579 |
Glycoside hydrolase, chitinase active site |
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| IPR011009 |
Protein kinase-like domain |
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| IPR008957 |
Fibronectin, type III-like fold |
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| IPR008979 |
Galactose-binding domain-like |
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| IPR020635 |
Tyrosine-protein kinase, subgroup, catalytic domain |
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| IPR000719 |
Protein kinase, catalytic domain |
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| IPR001426 |
Tyrosine-protein kinase, receptor class V, conserved site |
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| IPR003610 |
Carbohydrate-binding domain, family 5/12 |
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| IPR017853 |
Glycoside hydrolase, catalytic core |
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| IPR000242 |
Protein-tyrosine phosphatase, receptor/non-receptor type |
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| IPR003961 |
Fibronectin, type III |
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| IPR003962 |
Fibronectin, type III subdomain |
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| IPR001223 |
Glycoside hydrolase, family 18, catalytic domain |
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| IPR007110 |
Immunoglobulin-like |
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| IPR003598 |
Immunoglobulin subtype 2 |
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| IPR003599 |
Immunoglobulin subtype |
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| IPR001245 |
Tyrosine-protein kinase, catalytic domain |
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| IPR000387 |
Dual-specific/protein-tyrosine phosphatase, conserved region |
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| IPR013151 |
Immunoglobulin |
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| IPR001090 |
Ephrin receptor, ligand binding |
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| IPR008266 |
Tyrosine-protein kinase, active site |
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| IPR020685 |
Tyrosine-protein kinase |
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| IPR001660 |
Sterile alpha motif SAM |
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| IPR016257 |
Tyrosine-protein kinase, ephrin receptor |
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| IPR010993 |
Sterile alpha motif homology |
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ModBase |
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SWISS-MODEL |
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PDB Chain |
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CATH Domain |
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SCOP Domain |
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Publications
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1.
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Skorstengaard K, Jensen MS, Sahl P, Petersen TE, Magnusson S.
Complete primary structure of bovine plasma fibronectin.
Eur. J. Biochem. 161 441-53 1986
[PubMed: 3780752]
http://dx.doi.org/10.1111/j.1432-1033.1986.tb10464.x
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2.
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Dean DC, Bowlus CL, Bourgeois S.
Cloning and analysis of the promotor region of the human fibronectin gene.
Proc. Natl. Acad. Sci. U.S.A. 84 1876-80 1987
[PubMed: 3031656]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=3031656&action=stream&blobtype=pdf
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3.
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Gulcher JR, Nies DE, Marton LS, Stefansson K.
An alternatively spliced region of the human hexabrachion contains a repeat of potential N-glycosylation sites.
Proc. Natl. Acad. Sci. U.S.A. 86 1588-92 1989
[PubMed: 2466295]
http://ukpmc.ac.uk/articlerender.cgi?tool=EBI&pubmedid=2466295
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4.
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Schwarzbauer JE, Tamkun JW, Lemischka IR, Hynes RO.
Three different fibronectin mRNAs arise by alternative splicing within the coding region.
Cell 35 421-31 1983
[PubMed: 6317187]
http://dx.doi.org/10.1016/0092-8674(83)90175-7
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InterPro 23.1
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