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InterPro: IPR003962 Fibronectin, type III subdomain

Protein matchesHelp
UniProtKB
Matches:
784 proteins
AccessionHelp IPR003962 FnIII_subd
SecondaryHelp IPR001777
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR003961 Fibronectin, type III
Found in IPR012013 Integrin beta-4 subunit
IPR016257 Tyrosine-protein kinase, ephrin receptor
IPR020767 Tyrosine-protein kinase, ephrin B6 receptor
IPR020768 Tyrosine-protein kinase, ephrin A receptor
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes [1]. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis [2]. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [3], although related sequences can also display cell adhesion activity.

Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene [1]. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure [4].

The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface [1]. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.

Structural linksHelp
SCOP: b.1.2.1
Database linksHelp
Blocks: IPB003962

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR003962 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P10586 Receptor-type tyrosine-protein phosphatase F

P16621 Tyrosine-protein phosphatase Lar

P27050 Chitinase D

P54763 Ephrin type-B receptor 2

Q9BMN8 Tyrosine-protein phosphatase Lar-like

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR013781 Glycoside hydrolase, subgroup, catalytic core
IPR013783 Immunoglobulin-like fold
IPR017441 Protein kinase, ATP binding site
IPR015520 Imaginal disc growth factor
IPR013761 Sterile alpha motif-type
IPR013098 Immunoglobulin I-set
IPR016130 Protein-tyrosine phosphatase, active site
IPR001579 Glycoside hydrolase, chitinase active site
IPR011009 Protein kinase-like domain
IPR008957 Fibronectin, type III-like fold
IPR008979 Galactose-binding domain-like
IPR020635 Tyrosine-protein kinase, subgroup, catalytic domain
IPR000719 Protein kinase, catalytic domain
IPR001426 Tyrosine-protein kinase, receptor class V, conserved site
IPR003610 Carbohydrate-binding domain, family 5/12
IPR017853 Glycoside hydrolase, catalytic core
IPR000242 Protein-tyrosine phosphatase, receptor/non-receptor type
IPR003961 Fibronectin, type III
IPR003962 Fibronectin, type III subdomain
IPR001223 Glycoside hydrolase, family 18, catalytic domain
IPR007110 Immunoglobulin-like
IPR003598 Immunoglobulin subtype 2
IPR003599 Immunoglobulin subtype
IPR001245 Tyrosine-protein kinase, catalytic domain
IPR000387 Dual-specific/protein-tyrosine phosphatase, conserved region
IPR013151 Immunoglobulin
IPR001090 Ephrin receptor, ligand binding
IPR008266 Tyrosine-protein kinase, active site
IPR020685 Tyrosine-protein kinase
IPR001660 Sterile alpha motif SAM
IPR016257 Tyrosine-protein kinase, ephrin receptor
IPR010993 Sterile alpha motif homology
ModBase
SWISS-MODEL
PDB Chain
CATH Domain
SCOP Domain

PublicationsHelp
1. Skorstengaard K, Jensen MS, Sahl P, Petersen TE, Magnusson S.
Complete primary structure of bovine plasma fibronectin.
Eur. J. Biochem. 161 441-53 1986 [PubMed: 3780752]
http://dx.doi.org/10.1111/j.1432-1033.1986.tb10464.x
2. Dean DC, Bowlus CL, Bourgeois S.
Cloning and analysis of the promotor region of the human fibronectin gene.
Proc. Natl. Acad. Sci. U.S.A. 84 1876-80 1987 [PubMed: 3031656]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=3031656&action=stream&blobtype=pdf
3. Gulcher JR, Nies DE, Marton LS, Stefansson K.
An alternatively spliced region of the human hexabrachion contains a repeat of potential N-glycosylation sites.
Proc. Natl. Acad. Sci. U.S.A. 86 1588-92 1989 [PubMed: 2466295]
http://ukpmc.ac.uk/articlerender.cgi?tool=EBI&pubmedid=2466295
4. Schwarzbauer JE, Tamkun JW, Lemischka IR, Hynes RO.
Three different fibronectin mRNAs arise by alternative splicing within the coding region.
Cell 35 421-31 1983 [PubMed: 6317187]
http://dx.doi.org/10.1016/0092-8674(83)90175-7

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InterPro 23.1