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InterPro: IPR003961 Fibronectin, type III

Protein matchesHelp
UniProtKB
Matches:
9234 proteins
AccessionHelp IPR003961 FN_III
SecondaryHelp IPR001777
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR008957 Fibronectin, type III-like fold
Children IPR003962 Fibronectin, type III subdomain
Found in IPR009167 Erythropoietin receptor
IPR011365 Cytokine IL-3/IL-5/GM-CSF receptor common beta chain
IPR012013 Integrin beta-4 subunit
IPR014390 Acid phosphatase, Aspergillus type
IPR015528 Interleukin-12 beta chain
IPR015725 Myosin light chain kinase
IPR015726 Serine/threonine protein kinase, striated muscle-specific
IPR015752 Leptin receptor
IPR015775 Tyrosine-protein kinase, receptor Axl-related
IPR015781 Tyrosine-protein kinase, angiopoietin receptor
IPR016246 Tyrosine-protein kinase, insulin-like receptor
IPR016257 Tyrosine-protein kinase, ephrin receptor
IPR016335 Leukocyte common antigen
IPR016669 Interferon alpha/beta receptor 1
IPR019326 Protein of unknown function DUF2369
IPR020682 Obscurin/Myosin light chain kinase
IPR020694 Tyrosine-protein kinase, ephrin receptor, subgroup
IPR020696 Tyrosine-protein kinase, receptor Tie-1
IPR020704 Tyrosine-protein kinase, receptor TYRO3, Zebrafish
IPR020705 Tyrosine-protein kinase, receptor MER
IPR020710 Tyrosine-protein kinase, insulin receptor
IPR020712 Tyrosine-protein kinase, insulin-related receptor
IPR020713 Tyrosine-protein kinase, insulin-like receptor, Drosphila
IPR020714 Tyrosine-protein kinase, insulin-like growth factor receptor
IPR020738 Tyrosine-protein kinase, receptor ROS/Sevenless
IPR020741 Tyrosine-protein kinase, receptor TYRO3
IPR020766 Tyrosine-protein kinase, ephrin A10 receptor
IPR020767 Tyrosine-protein kinase, ephrin B6 receptor
IPR020768 Tyrosine-protein kinase, ephrin A receptor
IPR020769 Tyrosine-protein kinase, ephrin B receptor
IPR020770 Tyrosine-protein kinase, ephrin A1/A2 receptor
IPR020772 Tyrosine-protein kinase, receptor Daf-2
Contains IPR003528 Long hematopoietin receptor, single chain, conserved site
IPR003529 Long hematopoietin receptor, gp130 family 2, conserved site
IPR003530 Long hematopoietin receptor, soluble alpha chain, conserved site
IPR003531 Short hematopoietin receptor, family 1, conserved site
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes [1]. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis [2]. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [3], although related sequences can also display cell adhesion activity.

Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene [1]. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure [4].

The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface [1]. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.

Structural linksHelp
PDB - click here
Database linksHelp
PROSITE doc: PDOC50853
PANDIT: PF00041
Pfam Clan: CL0159.12
InteractionsHelp
This domain has been experimentally proven to be involved in Protein:Protein interactions.
Representative data is shown with the following example proteins:

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR003961 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A2CG49 Kalirin

O01761 Muscle M-line assembly protein unc-89

O14522 Receptor-type tyrosine-protein phosphatase T

P20241 Neuroglian

P32618 Uncharacterized protein YEL043W

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR013783 Immunoglobulin-like fold
IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal
IPR000998 MAM
IPR017441 Protein kinase, ATP binding site
IPR017442 Serine/threonine-protein kinase-like domain
IPR013098 Immunoglobulin I-set
IPR007850 RCSD
IPR016130 Protein-tyrosine phosphatase, active site
IPR011009 Protein kinase-like domain
IPR008957 Fibronectin, type III-like fold
IPR018159 Spectrin/alpha-actinin
IPR000719 Protein kinase, catalytic domain
IPR002290 Serine/threonine-protein kinase domain
IPR000242 Protein-tyrosine phosphatase, receptor/non-receptor type
IPR011511 Variant SH3
IPR003961 Fibronectin, type III
IPR002017 Spectrin repeat
IPR011993 Pleckstrin homology-type
IPR007110 Immunoglobulin-like
IPR003598 Immunoglobulin subtype 2
IPR003599 Immunoglobulin subtype
IPR001849 Pleckstrin homology
IPR000219 Dbl homology (DH) domain
IPR000387 Dual-specific/protein-tyrosine phosphatase, conserved region
IPR001452 Src homology-3 domain
IPR013151 Immunoglobulin
IPR008271 Serine/threonine-protein kinase, active site
IPR009134 Tyrosine-protein kinase, vascular endothelial growth factor receptor (VEGFR), N-terminal
ModBase
SWISS-MODEL
PDB Chain
CATH Domain
SCOP Domain

PublicationsHelp
1. Skorstengaard K, Jensen MS, Sahl P, Petersen TE, Magnusson S.
Complete primary structure of bovine plasma fibronectin.
Eur. J. Biochem. 161 441-53 1986 [PubMed: 3780752]
http://dx.doi.org/10.1111/j.1432-1033.1986.tb10464.x
2. Dean DC, Bowlus CL, Bourgeois S.
Cloning and analysis of the promotor region of the human fibronectin gene.
Proc. Natl. Acad. Sci. U.S.A. 84 1876-80 1987 [PubMed: 3031656]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=3031656&action=stream&blobtype=pdf
3. Gulcher JR, Nies DE, Marton LS, Stefansson K.
An alternatively spliced region of the human hexabrachion contains a repeat of potential N-glycosylation sites.
Proc. Natl. Acad. Sci. U.S.A. 86 1588-92 1989 [PubMed: 2466295]
http://ukpmc.ac.uk/articlerender.cgi?tool=EBI&pubmedid=2466295
4. Schwarzbauer JE, Tamkun JW, Lemischka IR, Hynes RO.
Three different fibronectin mRNAs arise by alternative splicing within the coding region.
Cell 35 421-31 1983 [PubMed: 6317187]
http://dx.doi.org/10.1016/0092-8674(83)90175-7

Additional ReadingHelp
Bazan JF.
Structural design and molecular evolution of a cytokine receptor superfamily.
Proc. Natl. Acad. Sci. U.S.A. 87 1990 6934-8 [PubMed: 2169613]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=2169613&action=stream&blobtype=pdf
Yao S, Lum L, Beachy P.
The ihog cell-surface proteins bind Hedgehog and mediate pathway activation.
Cell 125 2006 343-57 [PubMed: 16630821]
http://dx.doi.org/10.1016/j.cell.2006.02.040
Svensson LA, Bondensgaard K, Norskov-Lauritsen L, Christensen L, Becker P, Andersen MD, Maltesen MJ, Rand KD, Breinholt J.
Crystal structure of a prolactin receptor antagonist bound to the extracellular domain of the prolactin receptor.
J. Biol. Chem. 283 2008 19085-94 [PubMed: 18467331]
http://dx.doi.org/10.1074/jbc.M801202200
Little E, Bork P, Doolittle RF.
Tracing the spread of fibronectin type III domains in bacterial glycohydrolases.
J. Mol. Evol. 39 1994 631-43 [PubMed: 7528812]
http://dx.doi.org/10.1007/BF00160409
Leahy DJ, Hendrickson WA, Aukhil I, Erickson HP.
Structure of a fibronectin type III domain from tenascin phased by MAD analysis of the selenomethionyl protein.
Science 258 1992 987-91 [PubMed: 1279805]
http://www.sciencemag.org/cgi/content/abstract/258/5084/987
Bork P, Doolittle RF.
Proposed acquisition of an animal protein domain by bacteria.
Proc. Natl. Acad. Sci. U.S.A. 89 1992 8990-4 [PubMed: 1409594]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=1409594&action=stream&blobtype=pdf
Kornblihtt AR, Umezawa K, Vibe-Pedersen K, Baralle FE.
Primary structure of human fibronectin: differential splicing may generate at least 10 polypeptides from a single gene.
EMBO J. 4 1985 1755-9 [PubMed: 2992939]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=2992939
Osterfield M, Egelund R, Young LM, Flanagan JG.
Interaction of amyloid precursor protein with contactins and NgCAM in the retinotectal system.
Development 135 2008 1189-99 [PubMed: 18272596]
http://dx.doi.org/10.1242/dev.007401
Lupardus PJ, Garcia KC.
The structure of interleukin-23 reveals the molecular basis of p40 subunit sharing with interleukin-12.
J. Mol. Biol. 382 2008 931-41 [PubMed: 18680750]
http://dx.doi.org/10.1016/j.jmb.2008.07.051
Beyer BM, Ingram R, Ramanathan L, Reichert P, Le HV, Madison V, Orth P.
Crystal structures of the pro-inflammatory cytokine interleukin-23 and its complex with a high-affinity neutralizing antibody.
J. Mol. Biol. 382 2008 942-55 [PubMed: 18708069]
http://dx.doi.org/10.1016/j.jmb.2008.08.001
Carafoli F, Saffell JL, Hohenester E.
Structure of the tandem fibronectin type 3 domains of neural cell adhesion molecule.
J. Mol. Biol. 377 2008 524-34 [PubMed: 18261743]
http://dx.doi.org/10.1016/j.jmb.2008.01.030
Leahy DJ, Aukhil I, Erickson HP.
2.0 A crystal structure of a four-domain segment of human fibronectin encompassing the RGD loop and synergy region.
Cell 84 1996 155-64 [PubMed: 8548820]
http://dx.doi.org/10.1016/S0092-8674(00)81002-8
LaPorte SL, Juo ZS, Vaclavikova J, Colf LA, Qi X, Heller NM, Keegan AD, Garcia KC.
Molecular and structural basis of cytokine receptor pleiotropy in the interleukin-4/13 system.
Cell 132 2008 259-72 [PubMed: 18243101]
http://dx.doi.org/10.1016/j.cell.2007.12.030
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InterPro 23.1