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InterPro: IPR003673 CoA-transferase family III

Protein matchesHelp
UniProtKB
Matches:
3511 proteins
AccessionHelp IPR003673 CoA-Trfase_fam_III
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Children IPR017659 Formyl-CoA transferase
GO Term annotationHelp
Process GO:0008152 metabolic process
Function GO:0003824 catalytic activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism:

  • Family I consists of CoA-transferases for 3-oxoacids (EC:2.8.3.5, EC:2.8.3.6), short-chain fatty acids (EC:2.8.3.8, EC:2.8.3.9) and glutaconate (EC:2.8.3.12). Most use succinyl-CoA or acetyl-CoA as CoA donors.
  • Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (EC:2.8.3.10, EC:2.8.3.11). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well.
  • Family III consists of formyl-CoA:oxalate CoA-transferase [1], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [2], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [3], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase [4]. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner [5].

This entry represents family III CoA-transferases.

Structural linksHelp
SCOP: c.123.1.1
Database linksHelp
Enzyme: EC:2.8.3
PANDIT: PF02515
Blocks: IPB003673

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR003673 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O06644 Formyl-coenzyme A transferase

O09174 Alpha-methylacyl-CoA racemase

P70473 Alpha-methylacyl-CoA racemase

Q09618 CaiB/baiF CoA-transferase family protein ZK892.4

Q9HAC7 CaiB/baiF CoA-transferase family protein C7orf10

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR003673 CoA-transferase family III
IPR017659 Formyl-CoA transferase
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain

PublicationsHelp
1. Jonsson S, Ricagno S, Lindqvist Y, Richards NG.
Kinetic and mechanistic characterization of the formyl-CoA transferase from Oxalobacter formigenes.
J. Biol. Chem. 279 36003-12 2004 [PubMed: 15213226]
http://dx.doi.org/10.1074/jbc.M404873200
2. Leutwein C, Heider J.
Succinyl-CoA:(R)-benzylsuccinate CoA-transferase: an enzyme of the anaerobic toluene catabolic pathway in denitrifying bacteria.
J. Bacteriol. 183 4288-95 2001 [PubMed: 11418570]
http://dx.doi.org/10.1128/JB.183.14.4288-4295.2001
3. Dickert S, Pierik AJ, Linder D, Buckel W.
The involvement of coenzyme A esters in the dehydration of (R)-phenyllactate to (E)-cinnamate by Clostridium sporogenes.
Eur. J. Biochem. 267 3874-84 2000 [PubMed: 10849007]
http://dx.doi.org/10.1046/j.1432-1327.2000.01427.x
4. Rangarajan ES, Li Y, Iannuzzi P, Cygler M, Matte A.
Crystal structure of Escherichia coli crotonobetainyl-CoA: carnitine CoA-transferase (CaiB) and its complexes with CoA and carnitinyl-CoA.
Biochemistry 44 5728-38 2005 [PubMed: 15823031]
http://dx.doi.org/10.1021/bi047656f
5. Heider J.
A new family of CoA-transferases.
FEBS Lett. 509 345-9 2001 [PubMed: 11749953]
http://dx.doi.org/10.1016/S0014-5793(01)03178-7

Additional ReadingHelp
Berthold CL, Toyota CG, Richards NG, Lindqvist Y.
Reinvestigation of the catalytic mechanism of formyl-CoA transferase, a class III CoA-transferase.
J. Biol. Chem. 283 2008 6519-29 [PubMed: 18162462]
http://dx.doi.org/10.1074/jbc.M709353200
Gogos A, Gorman J, Shapiro L.
Structure of Escherichia coli YfdW, a type III CoA transferase.
Acta Crystallogr. D Biol. Crystallogr. 60 2004 507-11 [PubMed: 14993676]
http://dx.doi.org/10.1107/S0907444904000034
Savolainen K, Bhaumik P, Schmitz W, Kotti TJ, Conzelmann E, Wierenga RK, Hiltunen JK.
Alpha-methylacyl-CoA racemase from Mycobacterium tuberculosis. Mutational and structural characterization of the active site and the fold.
J. Biol. Chem. 280 2005 12611-20 [PubMed: 15632186]
http://dx.doi.org/10.1074/jbc.M409704200
Bhaumik P, Schmitz W, Hassinen A, Hiltunen JK, Conzelmann E, Wierenga RK.
The catalysis of the 1,1-proton transfer by alpha-methyl-acyl-CoA racemase is coupled to a movement of the fatty acyl moiety over a hydrophobic, methionine-rich surface.
J. Mol. Biol. 367 2007 1145-61 [PubMed: 17320106]
http://dx.doi.org/10.1016/j.jmb.2007.01.062
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InterPro 23.1