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InterPro: IPR003451 LytB protein

Protein matchesHelp
UniProtKB
Matches:
1520 proteins
AccessionHelp IPR003451 LytB
TypeHelp Family
SignaturesHelp
GO Term annotationHelp
Process GO:0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
GO:0055114 oxidation reduction
InterPro annotation
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AbstractHelp

Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants [1].

LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood [2]. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [3].

Database linksHelp
Enzyme: EC:1.17.1.2
PANDIT: PF02401
Blocks: IPB003451

Taxonomic coverageHelp

Example proteinsHelp
A2BP63 4-hydroxy-3-methylbut-2-enyl diphosphate reductase

O67625 4-hydroxy-3-methylbut-2-enyl diphosphate reductase

Q55643 4-hydroxy-3-methylbut-2-enyl diphosphate reductase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR003451 LytB protein
PDB Chain

PublicationsHelp
1. Cunningham FX Jr, Lafond TP, Gantt E.
Evidence of a role for LytB in the nonmevalonate pathway of isoprenoid biosynthesis.
J. Bacteriol. 182 5841-8 2000 [PubMed: 11004185]
http://dx.doi.org/10.1128/JB.182.20.5841-5848.2000
2. Rohdich F, Hecht S, Gartner K, Adam P, Krieger C, Amslinger S, Arigoni D, Bacher A, Eisenreich W.
Studies on the nonmevalonate terpene biosynthetic pathway: metabolic role of IspH (LytB) protein.
Proc. Natl. Acad. Sci. U.S.A. 99 1158-63 2002 [PubMed: 11818558]
http://dx.doi.org/10.1073/pnas.032658999
3. Potter S, Yang X, Boulanger MJ, Ishiguro EE.
Occurrence of homologs of the Escherichia coli lytB gene in gram-negative bacterial species.
J. Bacteriol. 180 1959-61 1998 [PubMed: 9537400]
http://jb.asm.org/cgi/content/abstract/180/7/1959

Additional ReadingHelp
Altincicek B, Kollas A, Eberl M, Wiesner J, Sanderbrand S, Hintz M, Beck E, Jomaa H.
LytB, a novel gene of the 2-C-methyl-D-erythritol 4-phosphate pathway of isoprenoid biosynthesis in Escherichia coli.
FEBS Lett. 499 2001 37-40 [PubMed: 11418107]
http://dx.doi.org/10.1016/S0014-5793(01)02516-9
McAteer S, Coulson A, McLennan N, Masters M.
The lytB gene of Escherichia coli is essential and specifies a product needed for isoprenoid biosynthesis.
J. Bacteriol. 183 2001 7403-7 [PubMed: 11717301]
http://dx.doi.org/10.1128/JB.183.24.7403-7407.2001
Hintz M, Reichenberg A, Altincicek B, Bahr U, Gschwind RM, Kollas AK, Beck E, Wiesner J, Eberl M, Jomaa H.
Identification of (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate as a major activator for human gammadelta T cells in Escherichia coli.
FEBS Lett. 509 2001 317-22 [PubMed: 11741609]
http://dx.doi.org/10.1016/S0014-5793(01)03191-X
Gustafson CE, Kaul S, Ishiguro EE.
Identification of the Escherichia coli lytB gene, which is involved in penicillin tolerance and control of the stringent response.
J. Bacteriol. 175 1993 1203-5 [PubMed: 8432714]
http://jb.asm.org/cgi/content/abstract/175/4/1203
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InterPro 23.1