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InterPro: IPR003421 Opine dehydrogenase

Protein matchesHelp
UniProtKB
Matches:
315 proteins
AccessionHelp IPR003421 Opine_DH
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR013328 Dehydrogenase, multihelical
GO Term annotationHelp
Process GO:0055114 oxidation reduction
Function GO:0016491 oxidoreductase activity
GO:0050662 coenzyme binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

This group of enzymes act on the CH-NH substrate bond using NAD(+) or NADP(+) as an acceptor. This domain is found primarily in octopine dehydrogenase (EC:1.5.1.11), nopaline dehydrogenase (EC:1.5.1.19), and lysopine dehydrogenase (EC:1.5.1.16). NADPH is the preferred cofactor, but NADH is also used. Octopine dehydrogenase is involved in the reductive condensation of arginine and pyruvic acid to D-octopine [1].

Opine dehydrogenases can be found in both bacteria and marine cephalopods. In bacteria, some of these opine dehydrogenases are involved in crown gall tumours that are produced by Agrobacterium spp., and which encode for the opine dehydrogenases on a Ti-plasmid. These bacteria can transfer a portion of this plasmid (T-DNA) to a susceptible plant cell; the T-DNA then integrates into the plant nuclear genome, where its genes can be expressed. Some of these genes direct the synthesis and secretion of unusual amino acid and sugar derivatives called opines - these opines are used as a carbon and sometimes a nitrogen source by the infecting bacteria.

Opine dehydrogenases are also found in the marine invertebrate cephalopods (octopuses, squid, and cuttlefish). For example in marine cephalopods, octopine dehydrogenase activity in mantle muscle is significantly correlated with a species' ability to buffer the acidic end products of anaerobic metabolism, with activity declining strongly with a species' habitat depth [2].

Structural linksHelp
SCOP: a.100.1.5 , c.2.1.6
Database linksHelp
Enzyme: EC:1.5.1
PANDIT: PF02317
Blocks: IPB003421

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR003421 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
Q44297 Opine dehydrogenase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR006168 NAD-dependent glycerol-3-phosphate dehydrogenase
IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like
IPR003421 Opine dehydrogenase
IPR016040 NAD(P)-binding domain
IPR013328 Dehydrogenase, multihelical
IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. Britton KL, Asano Y, Rice DW.
Crystal structure and active site location of N-(1-D-carboxylethyl)-L-norvaline dehydrogenase.
Nat. Struct. Biol. 5 593-601 1998 [PubMed: 9665174]
http://dx.doi.org/10.1038/854
2. Seibel BA, Thuesen EV, Childress JJ.
Light-limitation on predator-prey interactions: consequences for metabolism and locomotion of deep-sea cephalopods.
Biol. Bull. 198 284-98 2000 [PubMed: 10786948]
http://www.biolbull.org/cgi/content/abstract/198/2/284

Additional ReadingHelp
Zanker H, Lurz G, Langridge U, Langridge P, Kreusch D, Schroder J.
Octopine and nopaline oxidases from Ti plasmids of Agrobacterium tumefaciens: molecular analysis, relationship, and functional characterization.
J. Bacteriol. 176 1994 4511-7 [PubMed: 8045881]
http://jb.asm.org/cgi/content/abstract/176/15/4511
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InterPro 23.1