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InterPro: IPR003187 Phospholipase A1

Protein matchesHelp
UniProtKB
Matches:
379 proteins
AccessionHelp IPR003187 PLA1
TypeHelp Family
SignaturesHelp
GO Term annotationHelp
Process GO:0006629 lipid metabolic process
Function GO:0004620 phospholipase activity
Component GO:0016020 membrane
InterPro annotation
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AbstractHelp

Outer membrane phospholipase A (OMPLA) is an integral membrane phospholipase, which is present in many Gram-negative bacteria and has a broad substrate specificity EC:3.1.1.32. The role of OMPLA has been most thoroughly studied in Escherichia coli, where it participates in the secretion of bacteriocins. Bacteriocin release is triggered by a lysis protein (bacteriocin release protein or BRP), followed by a phospholipase dependent accumulation of lysophospholipids and free fatty acids in the outer membrane [1]. The reaction products enhance the permeability of the outer membrane, which allows the semispecific secretion of bacteriocins. One speculative function of OMPLA is related to organic solvent tolerance in bacteria.

Structurally, it consists of a 12-stranded antiparallel beta-barrel with a convex and a flat side. The active site residues are exposed on the exterior of the flat face of the beta-barrel. The activity of the enzyme is regulated by reversible dimerisation. Dimer interactions occur exclusively in the membrane-embedded parts of the flat side of the beta-barrel, with polar residues embedded in an apolar environment forming the key interactions. The active site His and Ser residues are located at the exterior of the beta-barrel, at the outer leaflet side of the membrane. This location indicates that under normal conditions the substrate and the active site are physically separated, since in E. coli phospholipids are exclusively located in the inner leaflet of the outer membrane.

Structural linksHelp
SCOP: f.4.2.1
CATH: 2.40.230.10
Database linksHelp
PANDIT: PF02253
Blocks: IPB003187

Taxonomic coverageHelp

Example proteinsHelp
P0A921 Phospholipase A1

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Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR003187 Phospholipase A1
PDB Chain
ModBase
CATH Domain
SCOP Domain

PublicationsHelp
1. Snijder HJ, Timmins PA, Kalk KH, Dijkstra BW.
Detergent organisation in crystals of monomeric outer membrane phospholipase A.
J. Struct. Biol. 141 122-31 2003 [PubMed: 12615538]
http://dx.doi.org/10.1016/S1047-8477(02)00579-8

Additional ReadingHelp
Snijder HJ, Kingma RL, Kalk KH, Dekker N, Egmond MR, Dijkstra BW.
Structural investigations of calcium binding and its role in activity and activation of outer membrane phospholipase A from Escherichia coli.
J. Mol. Biol. 309 2001 477-89 [PubMed: 11371166]
http://dx.doi.org/10.1006/jmbi.2001.4675
Horrevoets AJ, Verheij HM, de Haas GH.
Inactivation of Escherichia coli outer-membrane phospholipase A by the affinity label hexadecanesulfonyl fluoride. Evidence for an active-site serine.
Eur. J. Biochem. 198 1991 247-53 [PubMed: 2040286]
http://dx.doi.org/10.1111/j.1432-1033.1991.tb16008.x
Snijder HJ, Van Eerde JH, Kingma RL, Kalk KH, Dekker N, Egmond MR, Dijkstra BW.
Structural investigations of the active-site mutant Asn156Ala of outer membrane phospholipase A: function of the Asn-His interaction in the catalytic triad.
Protein Sci. 10 2001 1962-9 [PubMed: 11567087]
http://dx.doi.org/10.1110/ps.17701
Snijder HJ, Ubarretxena-Belandia I, Blaauw M, Kalk KH, Verheij HM, Egmond MR, Dekker N, Dijkstra BW.
Structural evidence for dimerization-regulated activation of an integral membrane phospholipase.
Nature 401 1999 717-21 [PubMed: 10537112]
http://dx.doi.org/10.1038/44890
Brok RG, Brinkman E, van Boxtel R, Bekkers AC, Verheij HM, Tommassen J.
Molecular characterization of enterobacterial pldA genes encoding outer membrane phospholipase A.
J. Bacteriol. 176 1994 861-70 [PubMed: 8300539]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=8300539
Snijder HJ, Dijkstra BW.
Bacterial phospholipase A: structure and function of an integral membrane phospholipase.
Biochim. Biophys. Acta 1488 2000 91-101 [PubMed: 11080680]
http://dx.doi.org/10.1016/S1388-1981(00)00113-X
Dekker N.
Outer-membrane phospholipase A: known structure, unknown biological function.
Mol. Microbiol. 35 2000 711-7 [PubMed: 10692149]
http://dx.doi.org/10.1046/j.1365-2958.2000.01775.x
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InterPro 23.1