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InterPro: IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type

Protein matchesHelp
UniProtKB
Matches:
2584 proteins
AccessionHelp IPR003135 ATP-grasp_carboxylate-amine
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR005862 Phosphoribosylglycinamide formyltransferase 2
IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit
IPR011761 ATP-grasp fold
IPR011810 Cyanophycin synthetase
IPR016301 Phosphoribosylaminoimidazole carboxylase
Contains IPR013816 ATP-grasp fold, subdomain 2
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.

Structural linksHelp
SCOP: d.142.1.2
Database linksHelp
Enzyme: EC:2.1.2
PANDIT: PF02222
Blocks: IPB003135
Pfam Clan: CL0179.10

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR003135 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O58056 Phosphoribosylglycinamide formyltransferase 2

O66608 Phosphoribosylaminoimidazole carboxylase ATPase subunit

O74197 Phosphoribosylaminoimidazole carboxylase

P21264 Phosphoribosylaminoimidazole carboxylase

P73833 Cyanophycin synthetase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR013816 ATP-grasp fold, subdomain 2
IPR013817 Pre-ATP-grasp fold
IPR016301 Phosphoribosylaminoimidazole carboxylase
IPR013221 Mur ligase, central
IPR004101 Mur ligase, C-terminal
IPR016185 PreATP-grasp-like fold
IPR000031 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
IPR011761 ATP-grasp fold
IPR005862 Phosphoribosylglycinamide formyltransferase 2
IPR011054 Rudiment single hybrid motif
IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type
IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit
IPR011810 Cyanophycin synthetase
PDB Chain
ModBase
CATH Domain
SWISS-MODEL

PublicationsHelp

Additional ReadingHelp
Thoden JB, Holden HM, Firestine SM.
Structural analysis of the active site geometry of N5-carboxyaminoimidazole ribonucleotide synthetase from Escherichia coli.
Biochemistry 47 2008 13346-53 [PubMed: 19053251]
http://dx.doi.org/10.1021/bi801734z
Thoden JB, Kappock TJ, Stubbe J, Holden HM.
Three-dimensional structure of N5-carboxyaminoimidazole ribonucleotide synthetase: a member of the ATP grasp protein superfamily.
Biochemistry 38 1999 15480-92 [PubMed: 10569930]
http://dx.doi.org/10.1021/bi991618s
Galperin MY, Koonin EV.
A diverse superfamily of enzymes with ATP-dependent carboxylate-amine/thiol ligase activity.
Protein Sci. 6 1997 2639-43 [PubMed: 9416615]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=9416615&action=stream&blobtype=pdf
Thoden JB, Firestine S, Nixon A, Benkovic SJ, Holden HM.
Molecular structure of Escherichia coli PurT-encoded glycinamide ribonucleotide transformylase.
Biochemistry 39 2000 8791-802 [PubMed: 10913290]
http://dx.doi.org/10.1021/bi000926j
Thoden JB, Firestine SM, Benkovic SJ, Holden HM.
PurT-encoded glycinamide ribonucleotide transformylase. Accommodation of adenosine nucleotide analogs within the active site.
J. Biol. Chem. 277 2002 23898-908 [PubMed: 11953435]
http://dx.doi.org/10.1074/jbc.M202251200
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InterPro 23.1