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InterPro: IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type
Protein matches
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UniProtKB Matches: 2584 proteins |
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Accession
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IPR003135 ATP-grasp_carboxylate-amine |
Type
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Domain |
Signatures
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InterPro Relationships
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Found in
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IPR005862 Phosphoribosylglycinamide formyltransferase 2
IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit
IPR011761 ATP-grasp fold
IPR011810 Cyanophycin synthetase
IPR016301 Phosphoribosylaminoimidazole carboxylase
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Contains
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IPR013816 ATP-grasp fold, subdomain 2
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InterPro annotation
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Entry Details in BioMart
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Abstract
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The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.
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Structural links
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Database links
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Pfam Clan: CL0179.10
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Additional Reading
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Thoden JB, Holden HM, Firestine SM.
Structural analysis of the active site geometry of N5-carboxyaminoimidazole ribonucleotide synthetase from Escherichia coli.
Biochemistry 47 2008 13346-53
[PubMed: 19053251]
http://dx.doi.org/10.1021/bi801734z
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Thoden JB, Kappock TJ, Stubbe J, Holden HM.
Three-dimensional structure of N5-carboxyaminoimidazole ribonucleotide synthetase: a member of the ATP grasp protein superfamily.
Biochemistry 38 1999 15480-92
[PubMed: 10569930]
http://dx.doi.org/10.1021/bi991618s
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Galperin MY, Koonin EV.
A diverse superfamily of enzymes with ATP-dependent carboxylate-amine/thiol ligase activity.
Protein Sci. 6 1997 2639-43
[PubMed: 9416615]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=9416615&action=stream&blobtype=pdf
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Thoden JB, Firestine S, Nixon A, Benkovic SJ, Holden HM.
Molecular structure of Escherichia coli PurT-encoded glycinamide ribonucleotide transformylase.
Biochemistry 39 2000 8791-802
[PubMed: 10913290]
http://dx.doi.org/10.1021/bi000926j
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Thoden JB, Firestine SM, Benkovic SJ, Holden HM.
PurT-encoded glycinamide ribonucleotide transformylase. Accommodation of adenosine nucleotide analogs within the active site.
J. Biol. Chem. 277 2002 23898-908
[PubMed: 11953435]
http://dx.doi.org/10.1074/jbc.M202251200
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InterPro 23.1
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