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InterPro: IPR003084 Histone deacetylase

Protein matchesHelp
UniProtKB
Matches:
577 proteins
AccessionHelp IPR003084 His_deacetylse_1
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR000286 Histone deacetylase superfamily
GO Term annotationHelp
Process GO:0016575 histone deacetylation
Function GO:0004407 histone deacetylase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily [1].

HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [2, 3], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 [2]. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression [3]. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements [1]. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [3, 4].

HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [2, 3], and are also believed to deacetylate general transcription factors such as TFIIF and sequence- specific transcription factors such as p53 [2]. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positive charge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements [1]. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [3, 4].

Structural linksHelp
SCOP: c.42.1.2
CATH: 3.40.800.20
Database linksHelp
Enzyme: EC:3.5.1.98
Blocks: IPB003084

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR003084 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O09106 Histone deacetylase 1

O17695 Histone deacetylase 1

P32561 Histone deacetylase RPD3

Q94517 Histone deacetylase Rpd3

Q9BY41 Histone deacetylase 8

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR003084 Histone deacetylase
IPR000286 Histone deacetylase superfamily
SWISS-MODEL
PDB Chain
ModBase
CATH Domain
SCOP Domain

PublicationsHelp
1. Leipe DD, Landsman D.
Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are members of an ancient protein superfamily.
Nucleic Acids Res. 25 3693-7 1997 [PubMed: 9278492]
http://dx.doi.org/10.1093/nar/25.18.3693
2. Ayer DE.
Histone deacetylases: transcriptional repression with SINers and NuRDs.
Trends Cell Biol. 9 193-8 1999 [PubMed: 10322454]
http://dx.doi.org/10.1016/S0962-8924(99)01536-6
3. Kouzarides T.
Histone acetylases and deacetylases in cell proliferation.
Curr. Opin. Genet. Dev. 9 40-8 1999 [PubMed: 10072350]
http://dx.doi.org/10.1016/S0959-437X(99)80006-9
4. Archer SY, Hodin RA.
Histone acetylation and cancer.
Curr. Opin. Genet. Dev. 9 171-4 1999 [PubMed: 10322142]
http://dx.doi.org/10.1016/S0959-437X(99)80026-4

Additional ReadingHelp
Thomson S, Mahadevan LC, Clayton AL.
MAP kinase-mediated signalling to nucleosomes and immediate-early gene induction.
Semin. Cell Dev. Biol. 10 1999 205-14 [PubMed: 10441074]
http://dx.doi.org/10.1006/scdb.1999.0302
Grant PA, Berger SL.
Histone acetyltransferase complexes.
Semin. Cell Dev. Biol. 10 1999 169-77 [PubMed: 10441070]
http://dx.doi.org/10.1006/scdb.1999.0298
Turner BM.
Introduction: chromatin--a target for intracellular signalling pathways.
Semin. Cell Dev. Biol. 10 1999 165-7 [PubMed: 10441069]
http://dx.doi.org/10.1006/scdb.1999.0297
Magnaghi-Jaulin L, Ait-Si-Ali S, Harel-Bellan A.
Histone acetylation in signal transduction by growth regulatory signals.
Semin. Cell Dev. Biol. 10 1999 197-203 [PubMed: 10441073]
http://dx.doi.org/10.1006/scdb.1999.0301
Muchardt C, Yaniv M.
The mammalian SWI/SNF complex and the control of cell growth.
Semin. Cell Dev. Biol. 10 1999 189-95 [PubMed: 10441072]
http://dx.doi.org/10.1006/scdb.1999.0300
Vannini A, Volpari C, Gallinari P, Jones P, Mattu M, Carfi A, De Francesco R, Steinkuhler C, Di Marco S.
Substrate binding to histone deacetylases as shown by the crystal structure of the HDAC8-substrate complex.
EMBO Rep. 8 2007 879-84 [PubMed: 17721440]
http://dx.doi.org/10.1038/sj.embor.7401047
Somoza JR, Skene RJ, Katz BA, Mol C, Ho JD, Jennings AJ, Luong C, Arvai A, Buggy JJ, Chi E, Tang J, Sang BC, Verner E, Wynands R, Leahy EM, Dougan DR, Snell G, Navre M, Knuth MW, Swanson RV, McRee DE, Tari LW.
Structural snapshots of human HDAC8 provide insights into the class I histone deacetylases.
Structure 12 2004 1325-34 [PubMed: 15242608]
http://dx.doi.org/10.1016/j.str.2004.04.012
Finnin MS, Donigian JR, Cohen A, Richon VM, Rifkind RA, Marks PA, Breslow R, Pavletich NP.
Structures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors.
Nature 401 1999 188-93 [PubMed: 10490031]
http://dx.doi.org/10.1038/43710
Johnson CA, Turner BM.
Histone deacetylases: complex transducers of nuclear signals.
Semin. Cell Dev. Biol. 10 1999 179-88 [PubMed: 10441071]
http://dx.doi.org/10.1006/scdb.1999.0299
Minucci S, Pelicci PG.
Retinoid receptors in health and disease: co-regulators and the chromatin connection.
Semin. Cell Dev. Biol. 10 1999 215-25 [PubMed: 10441075]
http://dx.doi.org/10.1006/scdb.1999.0303
Jacobs JJ, van Lohuizen M.
Cellular memory of transcriptional states by Polycomb-group proteins.
Semin. Cell Dev. Biol. 10 1999 227-35 [PubMed: 10441076]
http://dx.doi.org/10.1006/scdb.1999.0304
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InterPro 23.1