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InterPro: IPR003084 Histone deacetylase
Protein matches
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UniProtKB Matches: 577 proteins |
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Accession
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IPR003084 His_deacetylse_1 |
Type
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Family |
Signatures
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InterPro Relationships
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Parent
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IPR000286 Histone deacetylase superfamily
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GO Term annotation
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Process
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GO:0016575 histone deacetylation
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Function
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GO:0004407 histone deacetylase activity
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InterPro annotation
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Entry Details in BioMart
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Abstract
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Histones can be reversibly acetylated on several lysine residues.
Regulation of transcription is caused in part by this
mechanism. Histone deacetylases catalyse the removal
of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily [1].
HDAs function in multi-subunit complexes, reversing the acetylation of
histones by histone acetyltransferases [2, 3], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 [2]. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression [3]. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements [1]. HDAs play important roles in the cell cycle and differentiation, and their
deregulation can contribute to the development of cancer [3, 4].
HDAs function in multi-subunit complexes, reversing the acetylation of
histones by histone acetyltransferases [2, 3], and are also believed to
deacetylate general transcription factors such as TFIIF and sequence-
specific transcription factors such as p53 [2]. Thus, HDAs contribute to
the regulation of transcription, in particular transcriptional repression. At N-terminal tails of histones, removal of the acetyl group from
the epsilon-amino group of a lysine side chain will restore its positive
charge, which may stabilise the histone-DNA interaction and prevent
activating transcription factors binding to promoter elements [1]. HDAs
play important roles in the cell cycle and differentiation, and their
deregulation can contribute to the development of cancer [3, 4].
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Structural links
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Database links
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Additional Reading
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Thomson S, Mahadevan LC, Clayton AL.
MAP kinase-mediated signalling to nucleosomes and immediate-early gene induction.
Semin. Cell Dev. Biol. 10 1999 205-14
[PubMed: 10441074]
http://dx.doi.org/10.1006/scdb.1999.0302
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Grant PA, Berger SL.
Histone acetyltransferase complexes.
Semin. Cell Dev. Biol. 10 1999 169-77
[PubMed: 10441070]
http://dx.doi.org/10.1006/scdb.1999.0298
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Turner BM.
Introduction: chromatin--a target for intracellular signalling pathways.
Semin. Cell Dev. Biol. 10 1999 165-7
[PubMed: 10441069]
http://dx.doi.org/10.1006/scdb.1999.0297
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Magnaghi-Jaulin L, Ait-Si-Ali S, Harel-Bellan A.
Histone acetylation in signal transduction by growth regulatory signals.
Semin. Cell Dev. Biol. 10 1999 197-203
[PubMed: 10441073]
http://dx.doi.org/10.1006/scdb.1999.0301
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Muchardt C, Yaniv M.
The mammalian SWI/SNF complex and the control of cell growth.
Semin. Cell Dev. Biol. 10 1999 189-95
[PubMed: 10441072]
http://dx.doi.org/10.1006/scdb.1999.0300
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Vannini A, Volpari C, Gallinari P, Jones P, Mattu M, Carfi A, De Francesco R, Steinkuhler C, Di Marco S.
Substrate binding to histone deacetylases as shown by the crystal structure of the HDAC8-substrate complex.
EMBO Rep. 8 2007 879-84
[PubMed: 17721440]
http://dx.doi.org/10.1038/sj.embor.7401047
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Somoza JR, Skene RJ, Katz BA, Mol C, Ho JD, Jennings AJ, Luong C, Arvai A, Buggy JJ, Chi E, Tang J, Sang BC, Verner E, Wynands R, Leahy EM, Dougan DR, Snell G, Navre M, Knuth MW, Swanson RV, McRee DE, Tari LW.
Structural snapshots of human HDAC8 provide insights into the class I histone deacetylases.
Structure 12 2004 1325-34
[PubMed: 15242608]
http://dx.doi.org/10.1016/j.str.2004.04.012
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Finnin MS, Donigian JR, Cohen A, Richon VM, Rifkind RA, Marks PA, Breslow R, Pavletich NP.
Structures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors.
Nature 401 1999 188-93
[PubMed: 10490031]
http://dx.doi.org/10.1038/43710
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Johnson CA, Turner BM.
Histone deacetylases: complex transducers of nuclear signals.
Semin. Cell Dev. Biol. 10 1999 179-88
[PubMed: 10441071]
http://dx.doi.org/10.1006/scdb.1999.0299
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Minucci S, Pelicci PG.
Retinoid receptors in health and disease: co-regulators and the chromatin connection.
Semin. Cell Dev. Biol. 10 1999 215-25
[PubMed: 10441075]
http://dx.doi.org/10.1006/scdb.1999.0303
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Jacobs JJ, van Lohuizen M.
Cellular memory of transcriptional states by Polycomb-group proteins.
Semin. Cell Dev. Biol. 10 1999 227-35
[PubMed: 10441076]
http://dx.doi.org/10.1006/scdb.1999.0304
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InterPro 23.1
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