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InterPro: IPR003031 Delta crystallin

Protein matchesHelp
UniProtKB
Matches:
4255 proteins
AccessionHelp IPR003031 D_crystallin
SecondaryHelp IPR002385
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR000362 Fumarate lyase
Children IPR009049 Argininosuccinate lyase
Found in IPR004708 Aspartate ammonia-lyase
IPR004769 Adenylosuccinate lyase
IPR005677 Fumarate hydratase, class II
Contains IPR020557 Fumarate lyase, conserved site
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fiber cells. Four major groups of crystallin have been distinguished on the basis of size, charge and immunological properties: alpha-, beta- and gamma-crystallins occur in all vertebrate classes (though gamma-crystallins are low or absent in avian lenses); and delta-crystallin is found exclusively in reptiles and birds [1, 2].

Delta-crystallin evolved in a common ancestor of reptiles and birds, by the overexpression of arginosuccinate lyase in the lens. At this time, a gene duplication took place, since when the lens gene has accumulated mutations in the coding sequence, rendering it enzymatically inactive. The proteins belong to a superfamily of distantly-related metabolic enzymes, all of which are active as homotetramers: they include fumarase, aspartase, adenylosuccinase and 3-carboxy-cis,cis-muconate lactonising enzyme.

The structure of delta-crystallin comprises mainly alpha-helical domains [2]. One domain is a bundle of 5 long helices, which forms a 20-helix bundle at the core of the tetramer. The structure reveals a putative active-site cleft, located on the boundary between 3 subunits of the tetramer.

Structural linksHelp
SCOP: a.127.1.1
Database linksHelp
Enzyme: EC:4.3.2.1
Blocks: IPB003031

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR003031 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O17214 Probable fumarate hydratase, mitochondrial

P04076 Argininosuccinate lyase

P04424 Argininosuccinate lyase

P54822 Adenylosuccinate lyase

P73257 Argininosuccinate lyase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR019468 Adenylosuccinate lyase, C-terminal
IPR020557 Fumarate lyase, conserved site
IPR003031 Delta crystallin
IPR008948 L-Aspartase-like
IPR018951 Fumarase C, C-terminal
IPR004769 Adenylosuccinate lyase
IPR005677 Fumarate hydratase, class II
IPR000362 Fumarate lyase
IPR009049 Argininosuccinate lyase
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. de Jong WW, Hendriks W, Mulders JW, Bloemendal H.
Evolution of eye lens crystallins: the stress connection.
Trends Biochem. Sci. 14 365-8 1989 [PubMed: 2688200]
http://dx.doi.org/10.1016/0968-0004(89)90009-1
2. Simpson A, Bateman O, Driessen H, Lindley P, Moss D, Mylvaganam S, Narebor E, Slingsby C.
The structure of avian eye lens delta-crystallin reveals a new fold for a superfamily of oligomeric enzymes.
Nat. Struct. Biol. 1 724-34 1994 [PubMed: 7634077]
http://dx.doi.org/10.1038/nsb1094-724

Additional ReadingHelp
Tsai M, Sampaleanu LM, Greene C, Creagh L, Haynes C, Howell PL.
A duck delta1 crystallin double loop mutant provides insight into residues important for argininosuccinate lyase activity.
Biochemistry 43 2004 11672-82 [PubMed: 15362851]
http://dx.doi.org/10.1021/bi0489006
Sampaleanu LM, Codding PW, Lobsanov YD, Tsai M, Smith GD, Horvatin C, Howell PL.
Structural studies of duck delta2 crystallin mutants provide insight into the role of Thr161 and the 280s loop in catalysis.
Biochem. J. 384 2004 437-47 [PubMed: 15320872]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=15320872&action=stream&blobtype=pdf
Yang J, Wang Y, Woolridge EM, Arora V, Petsko GA, Kozarich JW, Ringe D.
Crystal structure of 3-carboxy-cis,cis-muconate lactonizing enzyme from Pseudomonas putida, a fumarase class II type cycloisomerase: enzyme evolution in parallel pathways.
Biochemistry 43 2004 10424-34 [PubMed: 15301541]
http://dx.doi.org/10.1021/bi036205c
Bhaumik P, Koski MK, Bergmann U, Wierenga RK.
Structure determination and refinement at 2.44 A resolution of argininosuccinate lyase from Escherichia coli.
Acta Crystallogr. D Biol. Crystallogr. 60 2004 1964-70 [PubMed: 15502303]
http://dx.doi.org/10.1107/S0907444904021912
Rath VL, Fletterick RJ.
Parallel evolution in two homologues of phosphorylase.
Nat. Struct. Biol. 1 1994 681-90 [PubMed: 7634071]
http://dx.doi.org/10.1038/nsb1094-681
Lee HJ, Lai YH, Wu SY, Chen YH.
The effect of N-terminal truncation on double-dimer assembly of goose delta-crystallin.
Biochem. J. 392 2005 545-54 [PubMed: 16101585]
http://dx.doi.org/10.1042/BJ20050860

Real and artificial histories.
Nat. Struct. Biol. 1 1994 655-6 [PubMed: 7543359]
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InterPro 23.1