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InterPro: IPR003031 Delta crystallin
Protein matches
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UniProtKB Matches: 4255 proteins |
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Accession
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IPR003031 D_crystallin |
Secondary
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IPR002385
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Type
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Domain |
Signatures
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InterPro Relationships
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Parent
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IPR000362 Fumarate lyase
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Children
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IPR009049 Argininosuccinate lyase
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Found in
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IPR004708 Aspartate ammonia-lyase
IPR004769 Adenylosuccinate lyase
IPR005677 Fumarate hydratase, class II
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Contains
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IPR020557 Fumarate lyase, conserved site
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InterPro annotation
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Entry Details in BioMart
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Abstract
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The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fiber cells. Four major groups of crystallin have been distinguished on the basis of size, charge and immunological properties: alpha-, beta- and gamma-crystallins occur in all vertebrate classes (though gamma-crystallins are low or absent in avian lenses); and delta-crystallin is found exclusively in reptiles and birds [1, 2].
Delta-crystallin evolved in a common ancestor of reptiles and birds, by the overexpression of arginosuccinate lyase in the lens. At this time, a gene duplication took place, since when the lens gene has accumulated
mutations in the coding sequence, rendering it enzymatically inactive.
The proteins belong to a superfamily of distantly-related metabolic
enzymes, all of which are active as homotetramers: they include fumarase,
aspartase, adenylosuccinase and 3-carboxy-cis,cis-muconate lactonising
enzyme.
The structure of delta-crystallin comprises mainly alpha-helical domains [2]. One domain is a bundle of 5 long helices, which forms a 20-helix
bundle at the core of the tetramer. The structure reveals a putative
active-site cleft, located on the boundary between 3 subunits of the
tetramer.
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Structural links
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Database links
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Publications
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1.
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de Jong WW, Hendriks W, Mulders JW, Bloemendal H.
Evolution of eye lens crystallins: the stress connection.
Trends Biochem. Sci. 14 365-8 1989
[PubMed: 2688200]
http://dx.doi.org/10.1016/0968-0004(89)90009-1
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2.
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Simpson A, Bateman O, Driessen H, Lindley P, Moss D, Mylvaganam S, Narebor E, Slingsby C.
The structure of avian eye lens delta-crystallin reveals a new fold for a superfamily of oligomeric enzymes.
Nat. Struct. Biol. 1 724-34 1994
[PubMed: 7634077]
http://dx.doi.org/10.1038/nsb1094-724
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Additional Reading
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Tsai M, Sampaleanu LM, Greene C, Creagh L, Haynes C, Howell PL.
A duck delta1 crystallin double loop mutant provides insight into residues important for argininosuccinate lyase activity.
Biochemistry 43 2004 11672-82
[PubMed: 15362851]
http://dx.doi.org/10.1021/bi0489006
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Sampaleanu LM, Codding PW, Lobsanov YD, Tsai M, Smith GD, Horvatin C, Howell PL.
Structural studies of duck delta2 crystallin mutants provide insight into the role of Thr161 and the 280s loop in catalysis.
Biochem. J. 384 2004 437-47
[PubMed: 15320872]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=15320872&action=stream&blobtype=pdf
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Yang J, Wang Y, Woolridge EM, Arora V, Petsko GA, Kozarich JW, Ringe D.
Crystal structure of 3-carboxy-cis,cis-muconate lactonizing enzyme from Pseudomonas putida, a fumarase class II type cycloisomerase: enzyme evolution in parallel pathways.
Biochemistry 43 2004 10424-34
[PubMed: 15301541]
http://dx.doi.org/10.1021/bi036205c
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Bhaumik P, Koski MK, Bergmann U, Wierenga RK.
Structure determination and refinement at 2.44 A resolution of argininosuccinate lyase from Escherichia coli.
Acta Crystallogr. D Biol. Crystallogr. 60 2004 1964-70
[PubMed: 15502303]
http://dx.doi.org/10.1107/S0907444904021912
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Rath VL, Fletterick RJ.
Parallel evolution in two homologues of phosphorylase.
Nat. Struct. Biol. 1 1994 681-90
[PubMed: 7634071]
http://dx.doi.org/10.1038/nsb1094-681
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Lee HJ, Lai YH, Wu SY, Chen YH.
The effect of N-terminal truncation on double-dimer assembly of goose delta-crystallin.
Biochem. J. 392 2005 545-54
[PubMed: 16101585]
http://dx.doi.org/10.1042/BJ20050860
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Real and artificial histories.
Nat. Struct. Biol. 1 1994 655-6
[PubMed: 7543359]
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InterPro 23.1
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