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InterPro: IPR002811 Aspartate dehydrogenase

Protein matchesHelp
UniProtKB
Matches:
201 proteins
AccessionHelp IPR002811 Asp_DH
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR011182 Aspartate dehydrogenase, NAD biosynthesis
IPR020626 Aspartate dehydrogenase, NAD biosynthesis, prokaryotic
GO Term annotationHelp
Process GO:0006742 NADP catabolic process
GO:0019363 pyridine nucleotide biosynthetic process
GO:0055114 oxidation reduction
Function GO:0016491 oxidoreductase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

This group contains aspartate dehydrogenases that belong to a unique class of amino acid dehydrogenases.

The structure of Thermotoga maritima TM1643 has been found to contain an N-terminal Rossmann fold domain (which binds the NAD(+) cofactor) and a C-terminal alpha/beta domain [1]. This suggested that TM1643 may be a dehydrogenase with the active site located at the interface between the two domains. Enzymatic characterisation of TM1643 revealed that it possesses NAD or NADP-dependent dehydrogenase activity toward l-aspartate but no aspartate oxidase activity [1]. The product of the aspartate dehydrogenase activity is also iminoaspartate. It has been suggested that two different enzymes, an oxidase and a dehydrogenase, may have evolved to catalyse the first step of NAD biosynthesis [1]. Members of this group share some structural similarity to several other NAD(P)+-dependent oxidoreductases, including inositol 1-phosphate synthase, dihydrodipicolinate reductase, and ASA-DH [1].

It has been proposed that in Thermotoga maritima, TM1643 catalyses the first reaction of de novo biosynthesis of NAD from aspartate, and it produces iminoaspartate required for this pathway. The formation of an enzyme complex between TM1643 and NadA, the next enzyme of the pathway, may allow the channeling of this unstable product directly to the NadA active site [1].

The same domain is present in animals (e.g., Caenorhabditis elegans F17C8.3 protein).

Structural linksHelp
SCOP: c.2.1.3 , d.81.1.3
Database linksHelp
Enzyme: EC:1.4.1.21
PANDIT: PF01958

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR002811 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A6ND91 Putative L-aspartate dehydrogenase

O28440 Probable L-aspartate dehydrogenase

Q5FW48 Putative L-aspartate dehydrogenase

Q9DCQ2 Putative L-aspartate dehydrogenase

Q9X1X6 L-aspartate dehydrogenase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR011182 Aspartate dehydrogenase, NAD biosynthesis
IPR002811 Aspartate dehydrogenase
IPR016040 NAD(P)-binding domain
IPR020626 Aspartate dehydrogenase, NAD biosynthesis, prokaryotic
IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. Yang Z, Savchenko A, Yakunin A, Zhang R, Edwards A, Arrowsmith C, Tong L.
Aspartate dehydrogenase, a novel enzyme identified from structural and functional studies of TM1643.
J. Biol. Chem. 278 8804-8 2003 [PubMed: 12496312]
http://dx.doi.org/10.1074/jbc.M211892200

Additional ReadingHelp
Yoneda K, Sakuraba H, Tsuge H, Katunuma N, Ohshima T.
Crystal structure of archaeal highly thermostable L-aspartate dehydrogenase/NAD/citrate ternary complex.
FEBS J. 274 2007 4315-25 [PubMed: 17651440]
http://dx.doi.org/10.1111/j.1742-4658.2007.05961.x
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InterPro 23.1