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InterPro: IPR002579 Methionine sulphoxide reductase B

Protein matchesHelp
UniProtKB
Matches:
2065 proteins
AccessionHelp IPR002579 Methionine_sulphoxide_MsrB
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR011057 Mss4-like
GO Term annotationHelp
Process GO:0055114 oxidation reduction
Function GO:0008113 peptide-methionine-(S)-S-oxide reductase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine [1]. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [2, 3].

The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A [4]. The overall structure shows no resemblance to the structures of MsrA (IPR002569) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin.

In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains.

Structural linksHelp
SCOP: b.88.1.3
CATH: 2.170.150.20
Database linksHelp
Enzyme: EC:1.8.4.12
PANDIT: PF01641
Blocks: IPB002579
Pfam Clan: CL0080.8

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR002579 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P25566 Uncharacterized protein YCL033C

P34436 Uncharacterized protein F44E2.6

Q8INK9 Methionine-R-sulfoxide reductase B1

Q8IXL7 Methionine-R-sulfoxide reductase B3, mitochondrial

Q9JLC3 Methionine-R-sulfoxide reductase B1

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR011057 Mss4-like
IPR002579 Methionine sulphoxide reductase B
SWISS-MODEL
PDB Chain
ModBase

PublicationsHelp
1. Lowther WT, Brot N, Weissbach H, Honek JF, Matthews BW.
Thiol-disulfide exchange is involved in the catalytic mechanism of peptide methionine sulfoxide reductase.
Proc. Natl. Acad. Sci. U.S.A. 97 6463-8 2000 [PubMed: 10841552]
http://dx.doi.org/10.1073/pnas.97.12.6463
2. Koonin EV, Mushegian AR.
Complete genome sequences of cellular life forms: glimpses of theoretical evolutionary genomics.
Curr. Opin. Genet. Dev. 6 757-62 1996 [PubMed: 8994848]
http://dx.doi.org/10.1016/S0959-437X(96)80032-3
3. Mushegian AR, Koonin EV.
A minimal gene set for cellular life derived by comparison of complete bacterial genomes.
Proc. Natl. Acad. Sci. U.S.A. 93 10268-73 1996 [PubMed: 8816789]
http://dx.doi.org/10.1073/pnas.93.19.10268
4. Lowther WT, Weissbach H, Etienne F, Brot N, Matthews BW.
The mirrored methionine sulfoxide reductases of Neisseria gonorrhoeae pilB.
Nat. Struct. Biol. 9 348-52 2002 [PubMed: 11938352]

Additional ReadingHelp
Kryukov GV, Kumar RA, Koc A, Sun Z, Gladyshev VN.
Selenoprotein R is a zinc-containing stereo-specific methionine sulfoxide reductase.
Proc. Natl. Acad. Sci. U.S.A. 99 2002 4245-50 [PubMed: 11929995]
http://dx.doi.org/10.1073/pnas.072603099
Lescure A, Gautheret D, Carbon P, Krol A.
Novel selenoproteins identified in silico and in vivo by using a conserved RNA structural motif.
J. Biol. Chem. 274 1999 38147-54 [PubMed: 10608886]
http://dx.doi.org/10.1074/jbc.274.53.38147
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InterPro 23.1