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InterPro: IPR002508 Cell wall hydrolase/autolysin, catalytic

Protein matchesHelp
UniProtKB
Matches:
2980 proteins
AccessionHelp IPR002508 CW_Hdrlase/autolysin_cat
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR014234 N-acetylmuramoyl-L-alanine amidase CwlD
IPR017273 Cell-wall amidase, LytH , predicted
IPR017293 N-acetylmuramoyl-L-alanine amidase, YrvJ, predicted
GO Term annotationHelp
Process GO:0009253 peptidoglycan catabolic process
Function GO:0008745 N-acetylmuramoyl-L-alanine amidase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections [1].

Autolysin EC:3.5.1.28 hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.

Structural linksHelp
SCOP: c.56.5.6
CATH: 3.40.630.40
Database linksHelp
Enzyme: EC:3.5.1
PANDIT: PF01520
Blocks: IPB002508

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR002508 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
Q06320 Sporulation-specific N-acetylmuramoyl-L-alanine amidase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR002508 Cell wall hydrolase/autolysin, catalytic
IPR007730 Sporulation related domain
SWISS-MODEL
PDB Chain
ModBase

PublicationsHelp
1. Navarre WW, Schneewind O.
Surface proteins of gram-positive bacteria and mechanisms of their targeting to the cell wall envelope.
Microbiol. Mol. Biol. Rev. 63 174-229 1999 [PubMed: 10066836]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=10066836

Additional ReadingHelp
Kuroda A, Sugimoto Y, Funahashi T, Sekiguchi J.
Genetic structure, isolation and characterization of a Bacillus licheniformis cell wall hydrolase.
Mol. Gen. Genet. 234 1992 129-37 [PubMed: 1495475]
Korndorfer IP, Danzer J, Schmelcher M, Zimmer M, Skerra A, Loessner MJ.
The crystal structure of the bacteriophage PSA endolysin reveals a unique fold responsible for specific recognition of Listeria cell walls.
J. Mol. Biol. 364 2006 678-89 [PubMed: 17010991]
http://dx.doi.org/10.1016/j.jmb.2006.08.069
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InterPro 23.1