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InterPro: IPR002381 Ribonuclease phosphorolytic, bacterial-type

Protein matchesHelp
UniProtKB
Matches:
1102 proteins
AccessionHelp IPR002381 RNase_PH_bac-type
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Contains IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR015847 Exoribonuclease, phosphorolytic domain 2
IPR018336 Ribonuclease PH, conserved site
IPR020568 Ribosomal protein S5 domain 2-type fold
GO Term annotationHelp
Process GO:0008033 tRNA processing
Function GO:0000049 tRNA binding
GO:0004549 tRNA-specific ribonuclease activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Prokaryotic ribonuclease PH (EC:2.7.7.56) (RNase PH) is a phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates [1]. There is a similar protein in Caenorhabditis elegans that belongs to this group.

More information about these proteins can be found at Protein of the Month: RNA Exosomes [2].

Structural linksHelp
Database linksHelp
PDBe-motif: PS01277
Enzyme: EC:2.7.7.56
PROSITE doc: PDOC00983
Blocks: IPB002381

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR002381 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
B0CAB9 Ribonuclease PH

O67069 Ribonuclease PH

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR015847 Exoribonuclease, phosphorolytic domain 2
IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR018336 Ribonuclease PH, conserved site
IPR002381 Ribonuclease phosphorolytic, bacterial-type
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain

PublicationsHelp
1. Kelly KO, Deutscher MP.
Characterization of Escherichia coli RNase PH.
J. Biol. Chem. 267 17153-8 1992 [PubMed: 1512253]
http://intl.jbc.org/cgi/reprint/267/24/17153.pdf
2. McDowall J.
Protein of the Month - RNA Exosomes.
2007

Additional ReadingHelp
Choi JM, Park EY, Kim JH, Chang SK, Cho Y.
Probing the functional importance of the hexameric ring structure of RNase PH.
J. Biol. Chem. 279 2004 755-64 [PubMed: 14573594]
http://dx.doi.org/10.1074/jbc.M309628200
Harlow LS, Kadziola A, Jensen KF, Larsen S.
Crystal structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis and implications for its quaternary structure and tRNA binding.
Protein Sci. 13 2004 668-77 [PubMed: 14767080]
http://dx.doi.org/10.1110/ps.03477004
Ishii R, Nureki O, Yokoyama S.
Crystal structure of the tRNA processing enzyme RNase PH from Aquifex aeolicus.
J. Biol. Chem. 278 2003 32397-404 [PubMed: 12746447]
http://dx.doi.org/10.1074/jbc.M300639200
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InterPro 23.1