spacer
spacer

Jump to: InterProScan Databases Documentation FTP site Help Advanced search

InterPro: IPR002292 Ornithine carbamoyltransferase

Protein matchesHelp
UniProtKB
Matches:
2042 proteins
AccessionHelp IPR002292 Orn_carbamltrans
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR006130 Aspartate/ornithine carbamoyltransferase
GO Term annotationHelp
Process GO:0006520 cellular amino acid metabolic process
Function GO:0004585 ornithine carbamoyltransferase activity
Component GO:0009348 ornithine carbamoyltransferase complex
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The ornithine carbamoyltransferases are a family of enzymes that catalyse the production of citrulline from carbamoyl-phosphate and ornithine [1]. This reaction is part of the arginine biosynthetic pathway, and in some organisms the reaction is also part of the arginine deaminase pathway [2]. In most prokaryotes, and some lower eukaryotes, the enzyme is found in the cytoplasm, but in higher eukaryotes, such as mammals, the enzyme is found in the mitochondrial matrix and functions as part of the urea cycle. In most organisms analysed to date, the enzyme has been shown to consist of a trimer of identical or nonidentical subunits [3]. Extensive similarity has been found within the ornithine carbamoyltransferase family, some of the conserved areas being important in catalysis [4].

The C-terminal region of these enzymes shows a degree of similarity to the aspartate carbamoyltransferases, which are also known to bind carbamoyl- phosphate [5]. This region contains a highly conserved Cys residue (in a His-Cys-Lys-Pro motif) implicated in ornithine binding [3].

Structural linksHelp
SCOP: c.78.1.1
CATH: 3.40.50.1370
Database linksHelp
Enzyme: EC:2.1.3.3
Blocks: IPB002292

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR002292 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O50039 Ornithine carbamoyltransferase, chloroplastic

P00480 Ornithine carbamoyltransferase, mitochondrial

P05150 Ornithine carbamoyltransferase

P11725 Ornithine carbamoyltransferase, mitochondrial

Q55497 Ornithine carbamoyltransferase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR006130 Aspartate/ornithine carbamoyltransferase
IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding
IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain
IPR002292 Ornithine carbamoyltransferase
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. Martin PR, Cooperider JW, Mulks MH.
Sequence of the argF gene encoding ornithine transcarbamoylase from Neisseria gonorrhoeae.
Gene 94 139-40 1990 [PubMed: 2121620]
http://dx.doi.org/10.1016/0378-1119(90)90482-7
2. Baur H, Stalon V, Falmagne P, Luethi E, Haas D.
Primary and quaternary structure of the catabolic ornithine carbamoyltransferase from Pseudomonas aeruginosa. Extensive sequence homology with the anabolic ornithine carbamoyltransferases of Escherichia coli.
Eur. J. Biochem. 166 111-7 1987 [PubMed: 3109911]
http://dx.doi.org/10.1111/j.1432-1033.1987.tb13489.x
3. Huygen R, Crabeel M, Glansdorff N.
Nucleotide sequence of the ARG3 gene of the yeast Saccharomyces cerevisiae encoding ornithine carbamoyltransferase. Comparison with other carbamoyltransferases.
Eur. J. Biochem. 166 371-7 1987 [PubMed: 3038540]
http://dx.doi.org/10.1111/j.1432-1033.1987.tb13525.x
4. Upshall A, Gilbert T, Saari G, O'Hara PJ, Weglenski P, Berse B, Miller K, Timberlake WE.
Molecular analysis of the argB gene of Aspergillus nidulans.
Mol. Gen. Genet. 204 349-54 1986 [PubMed: 3020372]
http://dx.doi.org/10.1007/BF00425521
5. Mosqueda G, Van den Broeck G, Saucedo O, Bailey AM, Alvarez-Morales A, Herrera-Estrella L.
Isolation and characterization of the gene from Pseudomonas syringae pv. phaseolicola encoding the phaseolotoxin-insensitive ornithine carbamoyltransferase.
Mol. Gen. Genet. 222 461-6 1990 [PubMed: 2274044]
http://dx.doi.org/10.1007/BF00633857

Additional ReadingHelp
Sankaranarayanan R, Cherney MM, Cherney LT, Garen CR, Moradian F, James MN.
The crystal structures of ornithine carbamoyltransferase from Mycobacterium tuberculosis and its ternary complex with carbamoyl phosphate and L-norvaline reveal the enzyme's catalytic mechanism.
J. Mol. Biol. 375 2008 1052-63 [PubMed: 18062991]
http://dx.doi.org/10.1016/j.jmb.2007.11.025
De Gregorio A, Battistutta R, Arena N, Panzalorto M, Francescato P, Valentini G, Bruno G, Zanotti G.
Functional and structural characterization of ovine ornithine transcarbamoylase.
Org. Biomol. Chem. 1 2003 3178-85 [PubMed: 14527149]
http://dx.doi.org/10.1039/b304901a
Shi D, Morizono H, Yu X, Tong L, Allewell NM, Tuchman M.
Human ornithine transcarbamylase: crystallographic insights into substrate recognition and conformational changes.
Biochem. J. 354 2001 501-9 [PubMed: 11237854]
http://dx.doi.org/10.1042/0264-6021:3540501
Villeret V, Clantin B, Tricot C, Legrain C, Roovers M, Stalon V, Glansdorff N, Van Beeumen J.
The crystal structure of Pyrococcus furiosus ornithine carbamoyltransferase reveals a key role for oligomerization in enzyme stability at extremely high temperatures.
Proc. Natl. Acad. Sci. U.S.A. 95 1998 2801-6 [PubMed: 9501170]
http://dx.doi.org/10.1073/pnas.95.6.2801
Massant J, Wouters J, Glansdorff N.
Refined structure of Pyrococcus furiosus ornithine carbamoyltransferase at 1.87 A.
Acta Crystallogr. D Biol. Crystallogr. 59 2003 2140-9 [PubMed: 14646072]
http://dx.doi.org/10.1107/S0907444903019231
Shi D, Morizono H, Aoyagi M, Tuchman M, Allewell NM.
Crystal structure of human ornithine transcarbamylase complexed with carbamoyl phosphate and L-norvaline at 1.9 A resolution.
Proteins 39 2000 271-7 [PubMed: 10813810]
http://dx.doi.org/10.1002/(SICI)1097-0134(20000601)39:4<271::AID-PROT10>3.3.CO;2-5
spacer
spacer
InterPro 23.1