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InterPro: IPR002283 Isopenicillin N synthase

Protein matchesHelp
UniProtKB
Matches:
1044 proteins
AccessionHelp IPR002283 Isopenicillin-N_synthase
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Contains IPR002057 Isopenicillin N synthase, conserved site
IPR005123 Oxoglutarate/iron-dependent oxygenase
GO Term annotationHelp
Process GO:0055114 oxidation reduction
Function GO:0005506 iron ion binding
GO:0016491 oxidoreductase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Isopenicillin N synthase (IPNS) is a nonhaem-Fe2+-dependent enzyme that belongs to a class of nonhaem Fe2+-containing enzymes, which includes 2-oxoglutarate-dependent dioxygenases, 2-oxoglutarate-dependent hydroxy- lases, and enzymes involved in ethylene formation and anthocyaninidin biosynthesis. IPNS catalyses the stereospecific formation of the beta-lactam and thiazolidine rings of IPN via a 4-electron oxidation of the tripeptide ACV. The enzyme uses, as the sole electron acceptor, one molecule of dioxygen, which is completely reduced to two molecules of water. The oxygen stoichiometry shown by IPNS is the same as that for cytochrome C oxidase, but is unusual for nonhaem-iron-containing enzymes, which typically catalyse the transfer of one or both atoms of dioxygen into their substrates. IPNS thus provides an interesting contrast to dioxygenase enzymes.

All IPNS proteins reported to date have a molecular mass of 30-40kDa and are highly conserved. The degree of identity in the predicted amino acid sequence ranges from 54-75%. Two cysteines are invariant in all known IPNS sequences; these residues are believed to be functionally important for iron binding. Histidine and aspartic acid residues in the sequence constitute the endogenous ligands of the ferrous active site.

Structural linksHelp
SCOP: b.82.2.1
CATH: 2.60.120.330
Database linksHelp
Enzyme: EC:1
Blocks: IPB002283

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR002283 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P05326 Isopenicillin N synthetase

P0C5H5 Gibberellin 20 oxidase 2

P10621 Isopenicillin N synthetase

P24397 Hyoscyamine 6-dioxygenase

Q39103 Gibberellin 3-beta-dioxygenase 1

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR002057 Isopenicillin N synthase, conserved site
IPR005123 Oxoglutarate/iron-dependent oxygenase
IPR002283 Isopenicillin N synthase
SWISS-MODEL
PDB Chain
ModBase
CATH Domain
SCOP Domain

PublicationsHelp

Additional ReadingHelp
Ge W, Clifton IJ, Stok JE, Adlington RM, Baldwin JE, Rutledge PJ.
Isopenicillin N synthase mediates thiolate oxidation to sulfenate in a depsipeptide substrate analogue: implications for oxygen binding and a link to nitrile hydratase?
J. Am. Chem. Soc. 130 2008 10096-102 [PubMed: 18620394]
http://dx.doi.org/10.1021/ja8005397
Stewart AC, Clifton IJ, Adlington RM, Baldwin JE, Rutledge PJ.
A cyclobutanone analogue mimics penicillin in binding to isopenicillin N synthase.
Chembiochem 8 2007 2003-7 [PubMed: 17907118]
http://dx.doi.org/10.1002/cbic.200700176
Tan DS, Sim TS.
Functional analysis of conserved histidine residues in Cephalosporium acremonium isopenicillin N synthase by site-directed mutagenesis.
J. Biol. Chem. 271 1996 889-94 [PubMed: 8557701]
http://dx.doi.org/10.1074/jbc.271.2.889
Long AJ, Clifton IJ, Roach PL, Baldwin JE, Rutledge PJ, Schofield CJ.
Structural studies on the reaction of isopenicillin N synthase with the truncated substrate analogues delta-(L-alpha-aminoadipoyl)-L-cysteinyl-glycine and delta-(L-alpha-aminoadipoyl)-L-cysteinyl-D-alanine.
Biochemistry 44 2005 6619-28 [PubMed: 15850395]
http://dx.doi.org/10.1021/bi047478q
Daruzzaman A, Clifton IJ, Adlington RM, Baldwin JE, Rutledge PJ.
Unexpected oxidation of a depsipeptide substrate analogue in crystalline isopenicillin N synthase.
Chembiochem 7 2006 351-8 [PubMed: 16444759]
http://dx.doi.org/10.1002/cbic.200500282
Howard-Jones AR, Elkins JM, Clifton IJ, Roach PL, Adlington RM, Baldwin JE, Rutledge PJ.
Interactions of isopenicillin N synthase with cyclopropyl-containing substrate analogues reveal new mechanistic insight.
Biochemistry 46 2007 4755-62 [PubMed: 17397141]
http://dx.doi.org/10.1021/bi062314q
Tiow-Suan S, Tan DS.
Histidine-272 of isopenicillin N synthase of Cephalosporium acremonium, which is possibly involved in iron binding, is essential for its catalytic activity.
FEMS Microbiol. Lett. 120 1994 241-7 [PubMed: 8076799]
http://dx.doi.org/10.1016/0378-1097(94)90478-2
Borovok I, Landman O, Kreisberg-Zakarin R, Aharonowitz Y, Cohen G.
Ferrous active site of isopenicillin N synthase: genetic and sequence analysis of the endogenous ligands.
Biochemistry 35 1996 1981-7 [PubMed: 8639682]
http://dx.doi.org/10.1021/bi951534t
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InterPro 23.1