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InterPro: IPR002044 Glycoside hydrolase, carbohydrate-binding

Protein matchesHelp
UniProtKB
Matches:
710 proteins
AccessionHelp IPR002044 Glyco_hydro_carb-bd
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR013784 Carbohydrate-binding-like fold
Found in IPR008291 Glucan 1,4-alpha-glucosidase, starch-binding
IPR013783 Immunoglobulin-like fold
GO Term annotationHelp
Process GO:0005975 carbohydrate metabolic process
Function GO:0003824 catalytic activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

O-Glycosyl hydrolases EC:3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [1, 2, 3]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site [4]. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in clans.

This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.

Structural linksHelp
PDB - click here
Database linksHelp
PROSITE doc: PDOC51166
PANDIT: PF00686
Blocks: IPB002044

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR002044 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
Q10003 Uncharacterized protein T05H10.7

Q2QTC2 Phosphoglucan, water dikinase, chloroplastic

Q6ZY51 Phosphoglucan, water dikinase, chloroplastic

Q8C0L9 Putative glycerophosphodiester phosphodiesterase 5

Q9NPB8 Putative glycerophosphodiester phosphodiesterase 5

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR002044 Glycoside hydrolase, carbohydrate-binding
IPR013815 ATP-grasp fold, subdomain 1
IPR013784 Carbohydrate-binding-like fold
IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding
IPR013783 Immunoglobulin-like fold
IPR004129 Glycerophosphoryl diester phosphodiesterase
SWISS-MODEL
PDB Chain
ModBase

PublicationsHelp
1. Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G.
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases.
Proc. Natl. Acad. Sci. U.S.A. 92 7090-4 1995 [PubMed: 7624375]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=7624375&action=stream&blobtype=pdf
2. Davies G, Henrissat B.
Structures and mechanisms of glycosyl hydrolases.
Structure 3 853-9 1995 [PubMed: 8535779]
http://dx.doi.org/10.1016/S0969-2126(01)00220-9
3. Bairoch A.
Classification of glycosyl hydrolase families and index of glycosyl hydrolase entries in SWISS-PROT.
1999
4. Henrissat B, Coutinho PM.
Carbohydrate-Active Enzymes server.
1999

Additional ReadingHelp
Sorimachi K, Le Gal-Coeffet MF, Williamson G, Archer DB, Williamson MP.
Solution structure of the granular starch binding domain of Aspergillus niger glucoamylase bound to beta-cyclodextrin.
Structure 5 1997 647-61 [PubMed: 9195884]
http://dx.doi.org/10.1016/S0969-2126(97)00220-7
Hirata A, Adachi M, Utsumi S, Mikami B.
Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type.
Biochemistry 43 2004 12523-31 [PubMed: 15449941]
http://dx.doi.org/10.1021/bi049173h
Chen L, Coutinho PM, Nikolov Z, Ford C.
Deletion analysis of the starch-binding domain of Aspergillus glucoamylase.
Protein Eng. 8 1995 1049-55 [PubMed: 8771186]
http://dx.doi.org/10.1093/protein/8.10.1049
Goto M, Semimaru T, Furukawa K, Hayashida S.
Analysis of the raw starch-binding domain by mutation of a glucoamylase from Aspergillus awamori var. kawachi expressed in Saccharomyces cerevisiae.
Appl. Environ. Microbiol. 60 1994 3926-30 [PubMed: 7993082]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=7993082
Kelly RM, Leemhuis H, Rozeboom HJ, van Oosterwijk N, Dijkstra BW, Dijkhuizen L.
Elimination of competing hydrolysis and coupling side reactions of a cyclodextrin glucanotransferase by directed evolution.
Biochem. J. 413 2008 517-25 [PubMed: 18422488]
http://dx.doi.org/10.1042/BJ20080353
Leemhuis H, Rozeboom HJ, Dijkstra BW, Dijkhuizen L.
Improved thermostability of bacillus circulans cyclodextrin glycosyltransferase by the introduction of a salt bridge.
Proteins 54 2004 128-34 [PubMed: 14705029]
http://dx.doi.org/10.1002/prot.10516
Kanai R, Haga K, Akiba T, Yamane K, Harata K.
Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site.
Protein Sci. 13 2004 457-65 [PubMed: 14739329]
http://dx.doi.org/10.1110/ps.03408504
Miyake H, Kurisu G, Kusunoki M, Nishimura S, Kitamura S, Nitta Y.
Crystal structure of a catalytic site mutant of beta-amylase from Bacillus cereus var. mycoides cocrystallized with maltopentaose.
Biochemistry 42 2003 5574-81 [PubMed: 12741813]
http://dx.doi.org/10.1021/bi020712x
Klein C, Schulz GE.
Structure of cyclodextrin glycosyltransferase refined at 2.0 A resolution.
J. Mol. Biol. 217 1991 737-50 [PubMed: 1826034]
http://dx.doi.org/10.1016/0022-2836(91)90530-J
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InterPro 23.1