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InterPro: IPR002044 Glycoside hydrolase, carbohydrate-binding
Protein matches
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UniProtKB Matches: 710 proteins |
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Accession
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IPR002044 Glyco_hydro_carb-bd |
Type
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Domain |
Signatures
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InterPro Relationships
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Parent
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IPR013784 Carbohydrate-binding-like fold
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Found in
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IPR008291 Glucan 1,4-alpha-glucosidase, starch-binding
IPR013783 Immunoglobulin-like fold
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GO Term annotation
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Process
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GO:0005975 carbohydrate metabolic process
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Function
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GO:0003824 catalytic activity
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InterPro annotation
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Entry Details in BioMart
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Abstract
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O-Glycosyl hydrolases EC:3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [1, 2, 3]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site [4]. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in clans.
This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.
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Structural links
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Database links
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Additional Reading
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Sorimachi K, Le Gal-Coeffet MF, Williamson G, Archer DB, Williamson MP.
Solution structure of the granular starch binding domain of Aspergillus niger glucoamylase bound to beta-cyclodextrin.
Structure 5 1997 647-61
[PubMed: 9195884]
http://dx.doi.org/10.1016/S0969-2126(97)00220-7
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Hirata A, Adachi M, Utsumi S, Mikami B.
Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type.
Biochemistry 43 2004 12523-31
[PubMed: 15449941]
http://dx.doi.org/10.1021/bi049173h
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Chen L, Coutinho PM, Nikolov Z, Ford C.
Deletion analysis of the starch-binding domain of Aspergillus glucoamylase.
Protein Eng. 8 1995 1049-55
[PubMed: 8771186]
http://dx.doi.org/10.1093/protein/8.10.1049
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Goto M, Semimaru T, Furukawa K, Hayashida S.
Analysis of the raw starch-binding domain by mutation of a glucoamylase from Aspergillus awamori var. kawachi expressed in Saccharomyces cerevisiae.
Appl. Environ. Microbiol. 60 1994 3926-30
[PubMed: 7993082]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=7993082
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Kelly RM, Leemhuis H, Rozeboom HJ, van Oosterwijk N, Dijkstra BW, Dijkhuizen L.
Elimination of competing hydrolysis and coupling side reactions of a cyclodextrin glucanotransferase by directed evolution.
Biochem. J. 413 2008 517-25
[PubMed: 18422488]
http://dx.doi.org/10.1042/BJ20080353
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Leemhuis H, Rozeboom HJ, Dijkstra BW, Dijkhuizen L.
Improved thermostability of bacillus circulans cyclodextrin glycosyltransferase by the introduction of a salt bridge.
Proteins 54 2004 128-34
[PubMed: 14705029]
http://dx.doi.org/10.1002/prot.10516
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Kanai R, Haga K, Akiba T, Yamane K, Harata K.
Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site.
Protein Sci. 13 2004 457-65
[PubMed: 14739329]
http://dx.doi.org/10.1110/ps.03408504
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Miyake H, Kurisu G, Kusunoki M, Nishimura S, Kitamura S, Nitta Y.
Crystal structure of a catalytic site mutant of beta-amylase from Bacillus cereus var. mycoides cocrystallized with maltopentaose.
Biochemistry 42 2003 5574-81
[PubMed: 12741813]
http://dx.doi.org/10.1021/bi020712x
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Klein C, Schulz GE.
Structure of cyclodextrin glycosyltransferase refined at 2.0 A resolution.
J. Mol. Biol. 217 1991 737-50
[PubMed: 1826034]
http://dx.doi.org/10.1016/0022-2836(91)90530-J
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InterPro 23.1
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