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InterPro: IPR001991 Sodium:dicarboxylate symporter

Protein matchesHelp
UniProtKB
Matches:
4686 proteins
AccessionHelp IPR001991 Na-dicarboxylate_symporter
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Contains IPR018107 Sodium:dicarboxylate symporter, conserved site
GO Term annotationHelp
Process GO:0006835 dicarboxylic acid transport
Function GO:0017153 sodium:dicarboxylate symporter activity
Component GO:0016020 membrane
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

It has been shown [1] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [2] is known as the sodium:dicarboxylate symporter family (SDF).

Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [3, 4].

The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value.

Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.

Structural linksHelp
SCOP: f.49.1.1
Database linksHelp
PDBe-motif: PS00713 , PS00714
PROSITE doc: PDOC00591
PANDIT: PF00375
Blocks: IPB001991

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR001991 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A0KAU6 C4-dicarboxylate transport protein

A2VDL4 Neutral amino acid transporter A

O00341 Excitatory amino acid transporter 5

O35544 Excitatory amino acid transporter 4

Q10901 Excitatory amino acid transporter

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR001991 Sodium:dicarboxylate symporter
IPR018107 Sodium:dicarboxylate symporter, conserved site
SWISS-MODEL
ModBase

PublicationsHelp
1. Reizer J, Reizer A, Saier MH Jr.
A functional superfamily of sodium/solute symporters.
Biochim. Biophys. Acta 1197 133-66 1994 [PubMed: 8031825]
http://dx.doi.org/10.1016/0304-4157(94)90003-5
2. Storck T, Schulte S, Hofmann K, Stoffel W.
Structure, expression, and functional analysis of a Na(+)-dependent glutamate/aspartate transporter from rat brain.
Proc. Natl. Acad. Sci. U.S.A. 89 10955-9 1992 [PubMed: 1279699]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=1279699&action=stream&blobtype=pdf
3. Pines G, Danbolt NC, Bjoras M, Zhang Y, Bendahan A, Eide L, Koepsell H, Storm-Mathisen J, Seeberg E, Kanner BI.
Cloning and expression of a rat brain L-glutamate transporter.
Nature 360 464-7 1992 [PubMed: 1448170]
http://dx.doi.org/10.1038/360464a0
4. Kanai Y, Hediger MA.
Primary structure and functional characterization of a high-affinity glutamate transporter.
Nature 360 467-71 1992 [PubMed: 1280334]
http://dx.doi.org/10.1038/360467a0

Additional ReadingHelp
Yernool D, Boudker O, Jin Y, Gouaux E.
Structure of a glutamate transporter homologue from Pyrococcus horikoshii.
Nature 431 2004 811-8 [PubMed: 15483603]
http://dx.doi.org/10.1038/nature03018
Amara SG.
Neurotransmitter transporters. A tale of two families.
Nature 360 1992 420-1 [PubMed: 1333057]
http://dx.doi.org/10.1038/360420d0
Tolner B, Poolman B, Konings WN.
Characterization and functional expression in Escherichia coli of the sodium/proton/glutamate symport proteins of Bacillus stearothermophilus and Bacillus caldotenax.
Mol. Microbiol. 6 1992 2845-56 [PubMed: 1359385]
http://dx.doi.org/10.1111/j.1365-2958.1992.tb01464.x
Boudker O, Ryan RM, Yernool D, Shimamoto K, Gouaux E.
Coupling substrate and ion binding to extracellular gate of a sodium-dependent aspartate transporter.
Nature 445 2007 387-93 [PubMed: 17230192]
http://dx.doi.org/10.1038/nature05455
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InterPro 23.1