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InterPro: IPR001968 Glycoside hydrolase, family 56

Protein matchesHelp
UniProtKB
Matches:
173 proteins
AccessionHelp IPR001968 Glycoside_hydrolase_family_56
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR018155 Hyaluronidase
Children IPR001329 Glycoside hydrolase, family 56, allergen Api/Dol m 2
Found in IPR017430 Glycoside hydrolase, family 56, Hyaluronidase
Contains IPR013785 Aldolase-type TIM barrel
IPR017853 Glycoside hydrolase, catalytic core
GO Term annotationHelp
Process GO:0005975 carbohydrate metabolic process
Function GO:0004415 hyalurononglucosaminidase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

O-Glycosyl hydrolases EC:3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [1, 2, 3]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site [4]. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in clans.

Glycoside hydrolase family 56 GH56 comprises enzymes with only one known activity; hyaluronidase EC:3.2.1.35.

The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase [5]. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites [5]. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation [5].

PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane [6]. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [6].

Structural linksHelp
SCOP: c.1.8.9
CATH: 3.20.20.70
Database linksHelp
Enzyme: EC:3.2.1.35
CAZy: GH56
PANDIT: PF01630
Blocks: IPB001968
Pfam Clan: CL0058.12

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR001968 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O35632 Hyaluronidase-2

P23613 Hyaluronidase PH-20

P49370 Hyaluronidase A

Q12794 Hyaluronidase-1

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR013785 Aldolase-type TIM barrel
IPR001439 Glycoside hydrolase, family 56, sperm surface protein PH20
IPR017853 Glycoside hydrolase, catalytic core
IPR006210 EGF-like
IPR017430 Glycoside hydrolase, family 56, Hyaluronidase
IPR001329 Glycoside hydrolase, family 56, allergen Api/Dol m 2
IPR001968 Glycoside hydrolase, family 56
IPR018155 Hyaluronidase
SWISS-MODEL
PDB Chain
ModBase
CATH Domain

PublicationsHelp
1. Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G.
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases.
Proc. Natl. Acad. Sci. U.S.A. 92 7090-4 1995 [PubMed: 7624375]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=7624375&action=stream&blobtype=pdf
2. Davies G, Henrissat B.
Structures and mechanisms of glycosyl hydrolases.
Structure 3 853-9 1995 [PubMed: 8535779]
http://dx.doi.org/10.1016/S0969-2126(01)00220-9
3. Bairoch A.
Classification of glycosyl hydrolase families and index of glycosyl hydrolase entries in SWISS-PROT.
1999
4. Henrissat B, Coutinho PM.
Carbohydrate-Active Enzymes server.
1999
5. Gmachl M, Kreil G.
Bee venom hyaluronidase is homologous to a membrane protein of mammalian sperm.
Proc. Natl. Acad. Sci. U.S.A. 90 3569-73 1993 [PubMed: 7682712]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=7682712
6. Lathrop WF, Carmichael EP, Myles DG, Primakoff P.
cDNA cloning reveals the molecular structure of a sperm surface protein, PH-20, involved in sperm-egg adhesion and the wide distribution of its gene among mammals.
J. Cell Biol. 111 2939-49 1990 [PubMed: 2269661]
http://dx.doi.org/10.1083/jcb.111.6.2939

Additional ReadingHelp
Padavattan S, Schirmer T, Schmidt M, Akdis C, Valenta R, Mittermann I, Soldatova L, Slater J, Mueller U, Markovic-Housley Z.
Identification of a B-cell epitope of hyaluronidase, a major bee venom allergen, from its crystal structure in complex with a specific Fab.
J. Mol. Biol. 368 2007 742-52 [PubMed: 17374540]
http://dx.doi.org/10.1016/j.jmb.2007.02.036
Gmachl M, Sagan S, Ketter S, Kreil G.
The human sperm protein PH-20 has hyaluronidase activity.
FEBS Lett. 336 1993 545-8 [PubMed: 8282124]
http://dx.doi.org/10.1016/0014-5793(93)80873-S
Markovic-Housley Z, Miglierini G, Soldatova L, Rizkallah PJ, Muller U, Schirmer T.
Crystal structure of hyaluronidase, a major allergen of bee venom.
Structure 8 2000 1025-35 [PubMed: 11080624]
http://dx.doi.org/10.1016/S0969-2126(00)00511-6
Skov LK, Seppala U, Coen JJ, Crickmore N, King TP, Monsalve R, Kastrup JS, Spangfort MD, Gajhede M.
Structure of recombinant Ves v 2 at 2.0 Angstrom resolution: structural analysis of an allergenic hyaluronidase from wasp venom.
Acta Crystallogr. D Biol. Crystallogr. 62 2006 595-604 [PubMed: 16699186]
http://dx.doi.org/10.1107/S0907444906010687
el Hassouni M, Henrissat B, Chippaux M, Barras F.
Nucleotide sequences of the arb genes, which control beta-glucoside utilization in Erwinia chrysanthemi: comparison with the Escherichia coli bgl operon and evidence for a new beta-glycohydrolase family including enzymes from eubacteria, archeabacteria, and humans.
J. Bacteriol. 174 1992 765-77 [PubMed: 1732212]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=1732212&action=stream&blobtype=pdf
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InterPro 23.1