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InterPro: IPR001791 Laminin G

Protein matchesHelp
UniProtKB
Matches:
1324 proteins
AccessionHelp IPR001791 Laminin_G
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR013320 Concanavalin A-like lectin/glucanase, subgroup
Children IPR012679 Laminin G, subdomain 1
IPR012680 Laminin G, subdomain 2
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Laminins are large heterotrimeric glycoproteins involved in basement membrane function [1]. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity [2]. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation [3]. The structure of the laminin-G domain has been predicted to resemble that of pentraxin [4].

Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan [2]. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. Proteins with laminin-G domains include:

  • Laminin.
  • Merosin.
  • Agrin.
  • Neurexins.
  • Vitamin K dependent protein S.
  • Sex steroid binding protein SBP/SHBG.
  • Drosophila proteins Slit, Crumbs, Fat.
  • several proteoglycan precursors.

Structural linksHelp
SCOP: b.29.1.4 , b.29.1.9
CATH: 2.60.120.200
Database linksHelp
PROSITE doc: PDOC50025
Blocks: IPB001791

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR001791 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O35206 Collagen alpha-1(XV) chain

O94813 Slit homolog 2 protein

P24014 Protein slit

P34616 Cadherin-3

P62575 Sialidase A

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR010515 Collagenase NC10/endostatin
IPR001791 Laminin G
IPR002860 BNR repeat
IPR019931 LPXTG-motif cell wall anchor
IPR006210 EGF-like
IPR000483 Cysteine-rich flanking region, C-terminal domain
IPR004124 Glycoside hydrolase, family 33, N-terminal
IPR001611 Leucine-rich repeat
IPR013032 EGF-like region, conserved site
IPR001899 Surface protein from Gram-positive cocci
IPR008160 Collagen triple helix repeat
IPR012680 Laminin G, subdomain 2
IPR018097 EGF-like calcium-binding, conserved site
IPR006207 Cystine knot, C-terminal
IPR001881 EGF-like calcium-binding
IPR013320 Concanavalin A-like lectin/glucanase, subgroup
IPR020894 Cadherin conserved site
IPR012679 Laminin G, subdomain 1
IPR003591 Leucine-rich repeat, typical subtype
IPR016187 C-type lectin fold
IPR016186 C-type lectin-like
IPR015919 Cadherin-like
IPR002126 Cadherin
IPR000372 Leucine-rich repeat-containing N-terminal domain
IPR000152 EGF-type aspartate/asparagine hydroxylation site
IPR000742 EGF-like, type 3
IPR011040 Neuraminidase
IPR005877 YSIRK Gram-positive signal peptide
IPR003645 Follistatin-like, N-terminal
IPR008985 Concanavalin A-like lectin/glucanase
IPR003129 Laminin G, thrombospondin-type, N-terminal
IPR006209 EGF
ModBase
SWISS-MODEL
PDB Chain
CATH Domain
SCOP Domain

PublicationsHelp
1. Sasaki T, Fassler R, Hohenester E.
Laminin: the crux of basement membrane assembly.
J. Cell Biol. 164 959-63 2004 [PubMed: 15037599]
http://dx.doi.org/10.1083/jcb.200401058
2. Tisi D, Talts JF, Timpl R, Hohenester E.
Structure of the C-terminal laminin G-like domain pair of the laminin alpha2 chain harbouring binding sites for alpha-dystroglycan and heparin.
EMBO J. 19 1432-40 2000 [PubMed: 10747011]
http://dx.doi.org/10.1093/emboj/19.7.1432
3. Ichikawa N, Kasai S, Suzuki N, Nishi N, Oishi S, Fujii N, Kadoya Y, Hatori K, Mizuno Y, Nomizu M, Arikawa-Hirasawa E.
Identification of neurite outgrowth active sites on the laminin alpha4 chain G domain.
Biochemistry 44 5755-62 2005 [PubMed: 15823034]
http://dx.doi.org/10.1021/bi0476228
4. Beckmann G, Hanke J, Bork P, Reich JG.
Merging extracellular domains: fold prediction for laminin G-like and amino-terminal thrombospondin-like modules based on homology to pentraxins.
J. Mol. Biol. 275 725-30 1998 [PubMed: 9480764]
http://dx.doi.org/10.1006/jmbi.1997.1510

Additional ReadingHelp
Koehnke J, Jin X, Trbovic N, Katsamba PS, Brasch J, Ahlsen G, Scheiffele P, Honig B, Palmer AG 3rd, Shapiro L.
Crystal structures of beta-neurexin 1 and beta-neurexin 2 ectodomains and dynamics of splice insertion sequence 4.
Structure 16 2008 410-21 [PubMed: 18334216]
http://dx.doi.org/10.1016/j.str.2007.12.024
Yurchenco PD, Sung U, Ward MD, Yamada Y, O'Rear JJ.
Recombinant laminin G domain mediates myoblast adhesion and heparin binding.
J. Biol. Chem. 268 1993 8356-65 [PubMed: 8463343]
http://intl.jbc.org/cgi/reprint/268/11/8356.pdf
Rudenko G, Nguyen T, Chelliah Y, Sudhof TC, Deisenhofer J.
The structure of the ligand-binding domain of neurexin Ibeta: regulation of LNS domain function by alternative splicing.
Cell 99 1999 93-101 [PubMed: 10520997]
http://dx.doi.org/10.1016/S0092-8674(00)80065-3
Harrison D, Hussain SA, Combs AC, Ervasti JM, Yurchenco PD, Hohenester E.
Crystal structure and cell surface anchorage sites of laminin alpha1LG4-5.
J. Biol. Chem. 282 2007 11573-81 [PubMed: 17307732]
http://dx.doi.org/10.1074/jbc.M610657200
Chen X, Liu H, Shim AH, Focia PJ, He X.
Structural basis for synaptic adhesion mediated by neuroligin-neurexin interactions.
Nat. Struct. Mol. Biol. 15 2008 50-6 [PubMed: 18084303]
http://dx.doi.org/10.1038/nsmb1350
Arac D, Boucard AA, Ozkan E, Strop P, Newell E, Sudhof TC, Brunger AT.
Structures of neuroligin-1 and the neuroligin-1/neurexin-1 beta complex reveal specific protein-protein and protein-Ca2+ interactions.
Neuron 56 2007 992-1003 [PubMed: 18093522]
http://dx.doi.org/10.1016/j.neuron.2007.12.002
Talts JF, Andac Z, Gohring W, Brancaccio A, Timpl R.
Binding of the G domains of laminin alpha1 and alpha2 chains and perlecan to heparin, sulfatides, alpha-dystroglycan and several extracellular matrix proteins.
EMBO J. 18 1999 863-70 [PubMed: 10022829]
http://dx.doi.org/10.1093/emboj/18.4.863
Shen KC, Kuczynska DA, Wu IJ, Murray BH, Sheckler LR, Rudenko G.
Regulation of neurexin 1beta tertiary structure and ligand binding through alternative splicing.
Structure 16 2008 422-31 [PubMed: 18334217]
http://dx.doi.org/10.1016/j.str.2008.01.005
Vuolteenaho R, Chow LT, Tryggvason K.
Structure of the human laminin B1 chain gene.
J. Biol. Chem. 265 1990 15611-6 [PubMed: 1975589]
http://intl.jbc.org/cgi/content/abstract/265/26/15611
Sung U, O'Rear JJ, Yurchenco PD.
Localization of heparin binding activity in recombinant laminin G domain.
Eur. J. Biochem. 250 1997 138-43 [PubMed: 9432001]
http://dx.doi.org/10.1111/j.1432-1033.1997.00138.x
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InterPro 23.1