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InterPro: IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal

Protein matchesHelp
UniProtKB
Matches:
3023 proteins
AccessionHelp IPR001732 UDP-Glc/GDP-Man_DH_N
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR016040 NAD(P)-binding domain
Found in IPR017476 Nucleotide sugar dehydrogenase
GO Term annotationHelp
Process GO:0055114 oxidation reduction
Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287 NAD or NADH binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [1, 2].

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, EC:1.1.1.22, is an important enzyme in the synthesis of hemicellulose and pectin [3], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation [4]. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence [5].

GDP-mannose dehydrogenase, EC:1.1.1.132, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [6], while in A. vinelandii it is essential for the encystment process [7].

This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [8, 9].

Structural linksHelp
SCOP: c.2.1.6
CATH: 3.40.50.720
Database linksHelp
Enzyme: EC:1.1.1
PANDIT: PF03721
Blocks: IPB001732
Pfam Clan: CL0063.21

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR001732 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O02373 UDP-glucose 6-dehydrogenase

O60701 UDP-glucose 6-dehydrogenase

O70475 UDP-glucose 6-dehydrogenase

Q19905 UDP-glucose 6-dehydrogenase

Q9FM01 Probable UDP-glucose 6-dehydrogenase 2

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like
IPR016040 NAD(P)-binding domain
IPR014028 UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain
IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal
IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation
IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal
IPR017476 Nucleotide sugar dehydrogenase
SWISS-MODEL
PDB Chain
ModBase
CATH Domain

PublicationsHelp
1. Roychoudhury S, May TB, Gill JF, Singh SK, Feingold DS, Chakrabarty AM.
Purification and characterization of guanosine diphospho-D-mannose dehydrogenase. A key enzyme in the biosynthesis of alginate by Pseudomonas aeruginosa.
J. Biol. Chem. 264 9380-5 1989 [PubMed: 2470755]
http://intl.jbc.org/cgi/content/abstract/264/16/9380
2. Campbell RE, Sala RF, van de Rijn I, Tanner ME.
Properties and kinetic analysis of UDP-glucose dehydrogenase from group A streptococci. Irreversible inhibition by UDP-chloroacetol.
J. Biol. Chem. 272 3416-22 1997 [PubMed: 9013585]
http://dx.doi.org/10.1074/jbc.272.6.3416
3. Johansson H, Sterky F, Amini B, Lundeberg J, Kleczkowski LA.
Molecular cloning and characterization of a cDNA encoding poplar UDP-glucose dehydrogenase, a key gene of hemicellulose/pectin formation.
Biochim. Biophys. Acta 1576 53-8 2002 [PubMed: 12031484]
http://dx.doi.org/10.1016/S0167-4781(02)00292-0
4. Walsh EC, Stainier DY.
UDP-glucose dehydrogenase required for cardiac valve formation in zebrafish.
Science 293 1670-3 2001 [PubMed: 11533493]
http://dx.doi.org/10.1126/science.293.5535.1670
5. Chang KW, Weng SF, Tseng YH.
UDP-glucose dehydrogenase gene of Xanthomonas campestris is required for virulence.
Biochem. Biophys. Res. Commun. 287 550-5 2001 [PubMed: 11554764]
http://dx.doi.org/10.1006/bbrc.2001.5591
6. Naught LE, Gilbert S, Imhoff R, Snook C, Beamer L, Tipton P.
Allosterism and cooperativity in Pseudomonas aeruginosa GDP-mannose dehydrogenase.
Biochemistry 41 9637-45 2002 [PubMed: 12135385]
http://dx.doi.org/10.1021/bi025862m
7. Nunez C, Moreno S, Soberon-Chavez G, Espin G.
The Azotobacter vinelandii response regulator AlgR is essential for cyst formation.
J. Bacteriol. 181 141-8 1999 [PubMed: 9864323]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=9864323&action=stream&blobtype=pdf
8. Campbell RE, Mosimann SC, van De Rijn I, Tanner ME, Strynadka NC.
The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation.
Biochemistry 39 7012-23 2000 [PubMed: 10841783]
http://dx.doi.org/10.1021/bi000181h
9. Snook CF, Tipton PA, Beamer LJ.
Crystal structure of GDP-mannose dehydrogenase: a key enzyme of alginate biosynthesis in P. aeruginosa.
Biochemistry 42 4658-68 2003 [PubMed: 12705829]
http://dx.doi.org/10.1021/bi027328k

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InterPro 23.1