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InterPro: IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase

Protein matchesHelp
UniProtKB
Matches:
4059 proteins
AccessionHelp IPR001709 Flavoprot_Pyr_Nucl_cyt_Rdtase
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Children IPR001433 Oxidoreductase FAD/NAD(P)-binding
Found in IPR001221 Phenol hydroxylase reductase
IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain
IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit
IPR012146 Ferredoxin--NADP reductase
IPR017634 Benzoyl-CoA oxygenase/reductase, BoxA protein
Contains IPR003097 FAD-binding, type 1
GO Term annotationHelp
Process GO:0055114 oxidation reduction
Function GO:0016491 oxidoreductase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Flavoprotein pyridine nucleotide cytochrome reductases [1] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [2], plant and fungal NAD(P)H:nitrate reductases [1, 3], NADH:cytochrome b5 reductases [4], NADPH:P450 reductases [5], NADPH:sulphite reductases [6], nitric oxide synthases [7], phthalate dioxygenase reductase [8], and various other flavoproteins.

Despite functional similarities, FPNCRs show no sequence similarity to NADPH:adrenodoxin reductases [9], nor to bacterial ferredoxin:NAD+reductases and their homologues [10]. To date, 3D-structures of 4 members of the family have been solved: Spinacia oleracea (Spinach) ferredoxin:NADP+ reductase [11]; Burkholderia cepacia (Pseudomonas cepacia) phthalate dioxygenase reductase [8]; the flavoprotein domain of Zea mays (Maize) nitrate reductase [12]; and Sus scrofa (Pig) NADH:cytochrome b5 reductase [13]. In all of them, the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet with 2 helices on each side) [8]. In spite of such structural similarities, the level of amino acid identity between family members is at or below the limit of significance (e.g., nitrate reductase is only 15% identical to FNR) [12].

Structural linksHelp
PDB - click here
Database linksHelp
Enzyme: EC:1
Blocks: IPB001709
COMe: PRX000052

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR001709 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P00387 NADH-cytochrome b5 reductase 3

P16603 NADPH--cytochrome P450 reductase

P29477 Nitric oxide synthase, inducible

Q17574 Putative methionine synthase reductase

Q27571 Nitric oxide synthase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR008333 Oxidoreductase, FAD-binding domain
IPR003097 FAD-binding, type 1
IPR001834 NADH:cytochrome b5 reductase (CBR)
IPR004030 Nitric oxide synthase, oxygenase domain
IPR001094 Flavodoxin-like
IPR001433 Oxidoreductase FAD/NAD(P)-binding
IPR017927 Ferredoxin reductase-type FAD-binding domain
IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase
IPR015702 NADPH Cytochrome P450 Reductase
IPR017938 Riboflavin synthase-like beta-barrel
IPR008254 Flavodoxin/nitric oxide synthase
IPR012144 Nitric-oxide synthase
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Hyde GE, Crawford NM, Campbell WH.
The sequence of squash NADH:nitrate reductase and its relationship to the sequences of other flavoprotein oxidoreductases. A family of flavoprotein pyridine nucleotide cytochrome reductases.
J. Biol. Chem. 266 23542-7 1991 [PubMed: 1748631]
http://intl.jbc.org/cgi/reprint/266/35/23542.pdf
2. Karplus PA, Bruns CM.
Structure-function relations for ferredoxin reductase.
J. Bioenerg. Biomembr. 26 89-99 1994 [PubMed: 8027025]
http://dx.doi.org/10.1007/BF00763221
3. Campbell WH, Kinghorn KR.
Functional domains of assimilatory nitrate reductases and nitrite reductases.
Trends Biochem. Sci. 15 315-9 1990 [PubMed: 2204158]
http://dx.doi.org/10.1016/0968-0004(90)90021-3
4. Yubisui T, Miyata T, Iwanaga S, Tamura M, Takeshita M.
Complete amino acid sequence of NADH-cytochrome b5 reductase purified from human erythrocytes.
J. Biochem. 99 407-22 1986 [PubMed: 3700359]
http://jb.oxfordjournals.org/cgi/content/abstract/99/2/407
5. Porter TD.
An unusual yet strongly conserved flavoprotein reductase in bacteria and mammals.
Trends Biochem. Sci. 16 154-8 1991 [PubMed: 1908607]
http://dx.doi.org/10.1016/0968-0004(91)90059-5
6. Ostrowski J, Barber MJ, Rueger DC, Miller BE, Siegel LM, Kredich NM.
Characterization of the flavoprotein moieties of NADPH-sulfite reductase from Salmonella typhimurium and Escherichia coli. Physicochemical and catalytic properties, amino acid sequence deduced from DNA sequence of cysJ, and comparison with NADPH-cytochrome P-450 reductase.
J. Biol. Chem. 264 15796-808 1989 [PubMed: 2550423]
http://intl.jbc.org/cgi/content/abstract/264/27/15796
7. Bredt DS, Hwang PM, Glatt CE, Lowenstein C, Reed RR, Snyder SH.
Cloned and expressed nitric oxide synthase structurally resembles cytochrome P-450 reductase.
Nature 351 714-8 1991 [PubMed: 1712077]
http://dx.doi.org/10.1038/351714a0
8. Correll CC, Ludwig ML, Bruns CM, Karplus PA.
Structural prototypes for an extended family of flavoprotein reductases: comparison of phthalate dioxygenase reductase with ferredoxin reductase and ferredoxin.
Protein Sci. 2 2112-33 1993 [PubMed: 8298460]
http://www.proteinscience.org/cgi/content/abstract/2/12/2112
9. Hanukoglu I, Gutfinger T.
cDNA sequence of adrenodoxin reductase. Identification of NADP-binding sites in oxidoreductases.
Eur. J. Biochem. 180 479-84 1989 [PubMed: 2924777]
http://dx.doi.org/10.1111/j.1432-1033.1989.tb14671.x
10. Eggink G, Engel H, Vriend G, Terpstra P, Witholt B.
Rubredoxin reductase of Pseudomonas oleovorans. Structural relationship to other flavoprotein oxidoreductases based on one NAD and two FAD fingerprints.
J. Mol. Biol. 212 135-42 1990 [PubMed: 2319593]
http://dx.doi.org/10.1016/0022-2836(90)90310-I
11. Karplus PA, Daniels MJ, Herriott JR.
Atomic structure of ferredoxin-NADP+ reductase: prototype for a structurally novel flavoenzyme family.
Science 251 60-6 1991 [PubMed: 1986412]
http://www.sciencemag.org/cgi/content/abstract/251/4989/60
12. Lu G, Campbell WH, Schneider G, Lindqvist Y.
Crystal structure of the FAD-containing fragment of corn nitrate reductase at 2.5 A resolution: relationship to other flavoprotein reductases.
Structure 2 809-21 1994 [PubMed: 7812715]
http://dx.doi.org/10.1016/S0969-2126(94)00082-4
13. Nishida H, Inaka K, Miki K.
Specific arrangement of three amino acid residues for flavin-binding barrel structures in NADH-cytochrome b5 reductase and the other flavin-dependent reductases.
FEBS Lett. 361 97-100 1995 [PubMed: 7890048]
http://dx.doi.org/10.1016/0014-5793(95)00161-2

Additional ReadingHelp
Tejero J, Perez-Dorado I, Maya C, Martinez-Julvez M, Sanz-Aparicio J, Gomez-Moreno C, Hermoso JA, Medina M.
C-terminal tyrosine of ferredoxin-NADP+ reductase in hydride transfer processes with NAD(P)+/H.
Biochemistry 44 2005 13477-90 [PubMed: 16216071]
http://dx.doi.org/10.1021/bi051278c
Mayoral T, Martinez-Julvez M, Perez-Dorado I, Sanz-Aparicio J, Gomez-Moreno C, Medina M, Hermoso JA.
Structural analysis of interactions for complex formation between Ferredoxin-NADP+ reductase and its protein partners.
Proteins 59 2005 592-602 [PubMed: 15789405]
http://dx.doi.org/10.1002/prot.20450
Nascimento AS, Catalano-Dupuy DL, Bernardes A, Neto Mde O, Santos MA, Ceccarelli EA, Polikarpov I.
Crystal structures of Leptospira interrogans FAD-containing ferredoxin-NADP+ reductase and its complex with NADP+.
BMC Struct. Biol. 7 2007 69 [PubMed: 17958910]
http://dx.doi.org/10.1186/1472-6807-7-69
Wang A, Zeng Y, Han H, Weeratunga S, Morgan BN, Moenne-Loccoz P, Schonbrunn E, Rivera M.
Biochemical and structural characterization of Pseudomonas aeruginosa Bfd and FPR: ferredoxin NADP+ reductase and not ferredoxin is the redox partner of heme oxygenase under iron-starvation conditions.
Biochemistry 46 2007 12198-211 [PubMed: 17915950]
http://dx.doi.org/10.1021/bi7013135
Cremades N, Bueno M, Toja M, Sancho J.
Towards a new therapeutic target: Helicobacter pylori flavodoxin.
Biophys. Chem. 115 2005 267-76 [PubMed: 15752617]
http://dx.doi.org/10.1016/j.bpc.2004.12.045
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InterPro 23.1