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InterPro: IPR001679 NAD-dependent DNA ligase

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1703 proteins

Overview:	sorted by AC,	sorted by name,	of known structure,	proteins with splice variants
Detailed:	sorted by AC,	sorted by name,	of known structure	proteins with splice variants
Table:	For all matching proteins,	of known structure
Architectures
Accession List
Matches in BioMart

Accession

IPR001679 DNAligase

Type

Family

Signatures Help

Database	ID	Name	Proteins
PIRSF	PIRSF001604	LigA	1648
TIGRFAMs	TIGR00575	dnlj	1681
Signatures in BioMart

InterPro Relationships Help

Contains

IPR001357 BRCT
IPR003583 Helix-hairpin-helix DNA-binding motif, class 1
IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type
IPR004150 NAD-dependent DNA ligase, OB-fold
IPR010994 RuvA domain 2-like
IPR013839 NAD-dependent DNA ligase, adenylation
IPR013840 NAD-dependent DNA ligase, N-terminal
IPR018239 NAD-dependent DNA ligase, active site

GO Term annotation Help

Process

GO:0006260 DNA replication
GO:0006281 DNA repair

Function

GO:0003911 DNA ligase (NAD+) activity

InterPro annotation

Entry Details in BioMart

Abstract

DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (EC:6.5.1.1), the other NAD (EC:6.5.1.2).

This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved [1, 2]. They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.

Structural links Help

PDB - click here

SCOP: a.60.2.2 , b.40.4.6 , c.15.1.2 , d.142.2.2

CATH: 1.10.150.20 , 1.10.287.610 , 2.40.50.140 , 3.30.1490.70 , 3.30.470.30 , 3.40.50.10190

Database links Help

PDBe-motif: PS01055 , PS01056

Enzyme: EC:6.5.1.2

PROSITE doc: PDOC00809

Blocks: IPB001679

Taxonomic coverage Help

Overlapping InterPro entries Help

IPR001679

Numbers of overlapping proteins

Average numbers of overlapping amino acids

Example proteins Help

A2C5E6 DNA ligase

B9LU22 DNA ligase

O87703 DNA ligase

P72588 DNA ligase

Q5UPZ0 DNA ligase

More proteins

Example Proteins Key

InterPro entry accession number/name and structure databases		Colour code
IPR001679	NAD-dependent DNA ligase
IPR003583	Helix-hairpin-helix DNA-binding motif, class 1
IPR010995	DNA repair Rad51/transcription factor NusA, alpha-helical
IPR004149	Zinc-finger, NAD-dependent DNA ligase C4-type
IPR010994	RuvA domain 2-like
IPR013839	NAD-dependent DNA ligase, adenylation
IPR004150	NAD-dependent DNA ligase, OB-fold
IPR016027	Nucleic acid-binding, OB-fold-like
IPR012340	Nucleic acid-binding, OB-fold
IPR018239	NAD-dependent DNA ligase, active site
IPR001357	BRCT
IPR013840	NAD-dependent DNA ligase, N-terminal
IPR000445	Helix-hairpin-helix motif
	PDB Chain
	ModBase
	CATH Domain
	SWISS-MODEL
	SCOP Domain

Publications Open in usermanual
1.	Shark KB, Conway T. Cloning and molecular characterization of the DNA ligase gene (lig) from Zymomonas mobilis. FEMS Microbiol. Lett. 75 19-26 1992 [PubMed: 1526462] http://dx.doi.org/10.1016/0378-1097(92)90450-3
2.	Gentry D, Bengra C, Ikehara K, Cashel M. Guanylate kinase of Escherichia coli K-12. J. Biol. Chem. 268 14316-21 1993 [PubMed: 8390989] http://intl.jbc.org/cgi/reprint/268/19/14316.pdf

Additional Reading Open in usermanual
	Lee JY, Chang C, Song HK, Moon J, Yang JK, Kim HK, Kwon ST, Suh SW. Crystal structure of NAD(+)-dependent DNA ligase: modular architecture and functional implications. EMBO J. 19 2000 1119-29 [PubMed: 10698952] http://dx.doi.org/10.1093/emboj/19.5.1119
	Gajiwala KS, Pinko C. Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal. Structure 12 2004 1449-59 [PubMed: 15296738] http://dx.doi.org/10.1016/j.str.2004.05.017
	Ishino Y, Shinagawa H, Makino K, Tsunasawa S, Sakiyama F, Nakata A. Nucleotide sequence of the lig gene and primary structure of DNA ligase of Escherichia coli. Mol. Gen. Genet. 204 1986 1-7 [PubMed: 3018436] http://dx.doi.org/10.1007/BF00330179
	Singleton MR, Hakansson K, Timson DJ, Wigley DB. Structure of the adenylation domain of an NAD+-dependent DNA ligase. Structure 7 1999 35-42 [PubMed: 10368271] http://dx.doi.org/10.1016/S0969-2126(99)80007-0

InterPro 23.1