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InterPro: IPR001586 Beta-lactamase, class C active site

Protein matchesHelp
UniProtKB
Matches:
627 proteins
AccessionHelp IPR001586 Beta_lactam_C_AS
TypeHelp Active_site
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR001466 Beta-lactamase-related
IPR012338 Beta-lactamase-type transpeptidase fold
GO Term annotationHelp
Process GO:0017001 antibiotic catabolic process
Function GO:0008800 beta-lactamase activity
Component GO:0030288 outer membrane-bounded periplasmic space
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

This active site signature detects all class C Beta-lactamases. The class C beta-lactamases are serine hydrolases belonging to MEROPS peptidase family S12 (D-Ala-D-Ala carboxypeptidase B family, clan SE). They are classed as non-peptidase homologues.

Beta-lactamases (EC:3.5.2.6) [1, 2] are enzymes which catalyse the hydrolysis of an amide bond in the beta-lactam ring of antibiotics belonging to the penicillin/cephalosporin family. Four kinds of beta-lactamase have been identified [3]. Class-B enzymes are zinc containing proteins whilst class -A, C and D enzymes are serine hydrolases. The three classes of serine beta-lactamases are evolutionary related and belong to a superfamily [4] that also includes DD-peptidases and a variety of other penicillin-binding proteins (PBP's). All these proteins contain a Ser-x-x-Lys motif, where the serine is the active site residue. Although clearly homologous, the sequences of the three classes of serine beta-lactamases exhibit a large degree of variability and only a small number of residues are conserved in addition to the catalytic serine.

Structural linksHelp
PDB - click here
SCOP: e.3.1.1
CATH: 3.40.710.10
Database linksHelp
PDBe-motif: PS00336
Enzyme: EC:3.5.2.6
PROSITE doc: PDOC00134
Blocks: IPB001586
MEROPS: S12

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR001586 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P00811 Beta-lactamase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR001586 Beta-lactamase, class C active site
IPR001466 Beta-lactamase-related
IPR012338 Beta-lactamase-type transpeptidase fold
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. Ambler RP.
The structure of beta-lactamases.
Philos. Trans. R. Soc. Lond., B, Biol. Sci. 289 321-31 1980 [PubMed: 6109327]
http://links.jstor.org/sici?sici=0080-4622%28198005%29289%3A1036%3C321%3ATSOBTT%3E2.0.CO%3B2-B&origin=EBI
2. Pastor N, Pinero D, Valdes AM, Soberon X.
Molecular evolution of class A beta-lactamases: phylogeny and patterns of sequence conservation.
Mol. Microbiol. 4 1957-65 1990 [PubMed: 2082152]
http://dx.doi.org/10.1111/j.1365-2958.1990.tb02045.x
3. Bush K.
Characterization of beta-lactamases.
Antimicrob. Agents Chemother. 33 259-63 1989 [PubMed: 2658779]
http://ukpmc.ac.uk/articlerender.cgi?tool=EBI&pubmedid=2658779
4. Joris B, Ghuysen JM, Dive G, Renard A, Dideberg O, Charlier P, Frere JM, Kelly JA, Boyington JC, Moews PC.
The active-site-serine penicillin-recognizing enzymes as members of the Streptomyces R61 DD-peptidase family.
Biochem. J. 250 313-24 1988 [PubMed: 3128280]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=3128280&action=stream&blobtype=pdf

Additional ReadingHelp
Michaux C, Massant J, Kerff F, Frere JM, Docquier JD, Vandenberghe I, Samyn B, Pierrard A, Feller G, Charlier P, Van Beeumen J, Wouters J.
Crystal structure of a cold-adapted class C beta-lactamase.
FEBS J. 275 2008 1687-97 [PubMed: 18312599]
http://dx.doi.org/10.1111/j.1742-4658.2008.06324.x
Venturelli A, Tondi D, Cancian L, Morandi F, Cannazza G, Segatore B, Prati F, Amicosante G, Shoichet BK, Costi MP.
Optimizing cell permeation of an antibiotic resistance inhibitor for improved efficacy.
J. Med. Chem. 50 2007 5644-54 [PubMed: 17956081]
http://dx.doi.org/10.1021/jm070643q
Babaoglu K, Simeonov A, Irwin JJ, Nelson ME, Feng B, Thomas CJ, Cancian L, Costi MP, Maltby DA, Jadhav A, Inglese J, Austin CP, Shoichet BK.
Comprehensive mechanistic analysis of hits from high-throughput and docking screens against beta-lactamase.
J. Med. Chem. 51 2008 2502-11 [PubMed: 18333608]
http://dx.doi.org/10.1021/jm701500e
Wyrembak PN, Babaoglu K, Pelto RB, Shoichet BK, Pratt RF.
O-aryloxycarbonyl hydroxamates: new beta-lactamase inhibitors that cross-link the active site.
J. Am. Chem. Soc. 129 2007 9548-9 [PubMed: 17628063]
http://dx.doi.org/10.1021/ja072370u
Morandi S, Morandi F, Caselli E, Shoichet BK, Prati F.
Structure-based optimization of cephalothin-analogue boronic acids as beta-lactamase inhibitors.
Bioorg. Med. Chem. 16 2008 1195-205 [PubMed: 17997318]
http://dx.doi.org/10.1016/j.bmc.2007.10.075
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InterPro 23.1