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InterPro: IPR001576 Phosphoglycerate kinase
Protein matches
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UniProtKB Matches: 2438 proteins |
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Accession
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IPR001576 Phosphoglycerate_kinase |
Type
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Family |
Signatures
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InterPro Relationships
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Contains
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IPR015824 Phosphoglycerate kinase, N-terminal
IPR015901 Phosphoglycerate kinase, C-terminal
IPR015911 Phosphoglycerate kinase, conserved site
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GO Term annotation
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Process
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GO:0006096 glycolysis
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Function
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GO:0004618 phosphoglycerate kinase activity
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InterPro annotation
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Entry Details in BioMart
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Abstract
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Phosphoglycerate kinase (EC:2.7.2.3) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to
3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants.
PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase [1]. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded [2].
Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man [3]. This entry represents the full PGK enzyme.
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Structural links
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Database links
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Publications
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1.
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Kumar S, Ma B, Tsai CJ, Wolfson H, Nussinov R.
Folding funnels and conformational transitions via hinge-bending motions.
Cell Biochem. Biophys. 31 141-64 1999
[PubMed: 10593256]
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2.
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Yon JM, Desmadril M, Betton JM, Minard P, Ballery N, Missiakas D, Gaillard-Miran S, Perahia D, Mouawad L.
Flexibility and folding of phosphoglycerate kinase.
Biochimie 72 417-29 1990
[PubMed: 2124145]
http://dx.doi.org/10.1016/0300-9084(90)90066-P
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3.
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Yoshida A, Tani K.
Phosphoglycerate kinase abnormalities: functional, structural and genomic aspects.
Biomed. Biochim. Acta 42 S263-7 1983
[PubMed: 6689547]
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Additional Reading
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Fujii H, Krietsch WK, Yoshida A.
A single amino acid substitution (Asp leads to Asn) in a phosphoglycerate kinase variant (PGK Munchen) associated with enzyme deficiency.
J. Biol. Chem. 255 1980 6421-3
[PubMed: 7391028]
http://intl.jbc.org/cgi/reprint/255/13/6421.pdf
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Sawyer GM, Monzingo AF, Poteet EC, O'Brien DA, Robertus JD.
X-ray analysis of phosphoglycerate kinase 2, a sperm-specific isoform from Mus musculus.
Proteins 71 2008 1134-44
[PubMed: 18004764]
http://dx.doi.org/10.1002/prot.21801
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Szilagyi AN, Ghosh M, Garman E, Vas M.
A 1.8 A resolution structure of pig muscle 3-phosphoglycerate kinase with bound MgADP and 3-phosphoglycerate in open conformation: new insight into the role of the nucleotide in domain closure.
J. Mol. Biol. 306 2001 499-511
[PubMed: 11178909]
http://dx.doi.org/10.1006/jmbi.2000.4294
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Flachner B, Kovari Z, Varga A, Gugolya Z, Vonderviszt F, Naray-Szabo G, Vas M.
Role of phosphate chain mobility of MgATP in completing the 3-phosphoglycerate kinase catalytic site: binding, kinetic, and crystallographic studies with ATP and MgATP.
Biochemistry 43 2004 3436-49
[PubMed: 15035615]
http://dx.doi.org/10.1021/bi035022n
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Tougard P, Bizebard T, Ritco-Vonsovici M, Minard P, Desmadril M.
Structure of a circularly permuted phosphoglycerate kinase.
Acta Crystallogr. D Biol. Crystallogr. 58 2002 2018-23
[PubMed: 12454459]
http://dx.doi.org/10.1107/S0907444902015548
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Kovari Z, Flachner B, Naray-Szabo G, Vas M.
Crystallographic and thiol-reactivity studies on the complex of pig muscle phosphoglycerate kinase with ATP analogues: correlation between nucleotide binding mode and helix flexibility.
Biochemistry 41 2002 8796-806
[PubMed: 12102622]
http://dx.doi.org/10.1021/bi020210j
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InterPro 23.1
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