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InterPro: IPR001555 Phosphoribosylglycinamide formyltransferase, active site

Protein matchesHelp
UniProtKB
Matches:
2072 proteins
AccessionHelp IPR001555 GART_AS
TypeHelp Active_site
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR002376 Formyl transferase, N-terminal
IPR004607 Phosphoribosylglycinamide formyltransferase
IPR005794 Methionyl-tRNA formyltransferase
IPR011407 10-formyltetrahydrofolate dehydrogenase
IPR015518 Methionine tRNA Formyltransferase-like
GO Term annotationHelp
Function GO:0008168 methyltransferase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Phosphoribosylglycinamide formyltransferase (EC:2.1.2.2) (GART) [1] catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. In higher eukaryotes, GART is part of a multifunctional enzyme polypeptide that catalyses three of the steps of purine biosynthesis. In bacteria, plants and yeast, GART is a monofunctional protein of about 200 amino-acid residues.

In the Escherichia coli enzyme, an aspartic acid residue has been shown to be involved in the catalytic mechanism. The region around this active site residue is well conserved in GART from prokaryotic and eukaryotic sources.

Mammalian formyltetrahydrofolate dehydrogenase (EC:1.5.1.6) [2] is a cytosolic enzyme responsible for the NADP-dependent decarboxylative reduction of 10-formyltetrahydrofolate into tetrahydrofolate. It is a protein of about 900 amino acids consisting of three domains; the N-terminal domain (200 residues) is structurally related to GARTs.

E. coli methionyl-tRNA formyltransferase (EC:2.1.2.9) (gene fmt) [3] is the enzyme responsible for modifying the free amino group of the aminoacyl moiety of methionyl-tRMA(fMet). The central part of fmt seems to be evolutionary related to GART's active site region.

This signature contains the Asp active site residue.

Structural linksHelp
SCOP: c.65.1.1
CATH: 3.40.50.170
Database linksHelp
PDBe-motif: PS00373
Enzyme: EC:2.1.2.9
PROSITE doc: PDOC00319

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR001555 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O75891 10-formyltetrahydrofolate dehydrogenase

P00967 Trifunctional purine biosynthetic protein adenosine-3

P04161 Phosphoribosylglycinamide formyltransferase

P52422 Phosphoribosylglycinamide formyltransferase, chloroplastic

Q64737 Trifunctional purine biosynthetic protein adenosine-3

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR002376 Formyl transferase, N-terminal
IPR011761 ATP-grasp fold
IPR001555 Phosphoribosylglycinamide formyltransferase, active site
IPR011034 Formyl transferase, C-terminal-like
IPR010918 AIR synthase related protein, C-terminal
IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase
IPR011054 Rudiment single hybrid motif
IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
IPR020560 Phosphoribosylglycinamide synthetase, C-domain
IPR009081 Acyl carrier protein-like
IPR020562 Phosphoribosylglycinamide synthetase, N-domain
IPR000115 Phosphoribosylglycinamide synthetase
IPR011407 10-formyltetrahydrofolate dehydrogenase
IPR013815 ATP-grasp fold, subdomain 1
IPR013816 ATP-grasp fold, subdomain 2
IPR013817 Pre-ATP-grasp fold
IPR020559 Phosphoribosylglycinamide synthetase, conserved site
IPR004607 Phosphoribosylglycinamide formyltransferase
IPR005793 Formyl transferase, C-terminal
IPR016188 PurM, N-terminal-like
IPR016162 Aldehyde dehydrogenase, N-terminal
IPR016161 Aldehyde/histidinol dehydrogenase
IPR016160 Aldehyde dehydrogenase, conserved site
IPR016185 PreATP-grasp-like fold
IPR015590 Aldehyde dehydrogenase
IPR000728 AIR synthase related protein
ModBase
SWISS-MODEL
PDB Chain
CATH Domain
SCOP Domain

PublicationsHelp
1. Inglese J, Smith JM, Benkovic SJ.
Active-site mapping and site-specific mutagenesis of glycinamide ribonucleotide transformylase from Escherichia coli.
Biochemistry 29 6678-87 1990 [PubMed: 2204419]
http://dx.doi.org/10.1021/bi00480a018
2. Cook RJ, Lloyd RS, Wagner C.
Isolation and characterization of cDNA clones for rat liver 10-formyltetrahydrofolate dehydrogenase.
J. Biol. Chem. 266 4965-73 1991 [PubMed: 1848231]
http://intl.jbc.org/cgi/content/abstract/266/8/4965
3. Guillon JM, Mechulam Y, Schmitter JM, Blanquet S, Fayat G.
Disruption of the gene for Met-tRNA(fMet) formyltransferase severely impairs growth of Escherichia coli.
J. Bacteriol. 174 4294-301 1992 [PubMed: 1624424]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=1624424&action=stream&blobtype=pdf

Additional ReadingHelp
Dahms TE, Sainz G, Giroux EL, Caperelli CA, Smith JL.
The apo and ternary complex structures of a chemotherapeutic target: human glycinamide ribonucleotide transformylase.
Biochemistry 44 2005 9841-50 [PubMed: 16026156]
http://dx.doi.org/10.1021/bi050307g
Kursula P, Schuler H, Flodin S, Nilsson-Ehle P, Ogg DJ, Savitsky P, Nordlund P, Stenmark P.
Structures of the hydrolase domain of human 10-formyltetrahydrofolate dehydrogenase and its complex with a substrate analogue.
Acta Crystallogr. D Biol. Crystallogr. 62 2006 1294-9 [PubMed: 17057331]
http://dx.doi.org/10.1107/S0907444906026849
Chumanevich AA, Krupenko SA, Davies C.
The crystal structure of the hydrolase domain of 10-formyltetrahydrofolate dehydrogenase: mechanism of hydrolysis and its interplay with the dehydrogenase domain.
J. Biol. Chem. 279 2004 14355-64 [PubMed: 14729668]
http://dx.doi.org/10.1074/jbc.M313934200
Zhang Y, Desharnais J, Greasley SE, Beardsley GP, Boger DL, Wilson IA.
Crystal structures of human GAR Tfase at low and high pH and with substrate beta-GAR.
Biochemistry 41 2002 14206-15 [PubMed: 12450384]
http://dx.doi.org/10.1021/bi020522m
Zhang Y, Desharnais J, Marsilje TH, Li C, Hedrick MP, Gooljarsingh LT, Tavassoli A, Benkovic SJ, Olson AJ, Boger DL, Wilson IA.
Rational design, synthesis, evaluation, and crystal structure of a potent inhibitor of human GAR Tfase: 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid.
Biochemistry 42 2003 6043-56 [PubMed: 12755606]
http://dx.doi.org/10.1021/bi034219c
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InterPro 23.1