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InterPro: IPR001341 Aspartate kinase domain

Protein matchesHelp
UniProtKB
Matches:
2740 proteins
AccessionHelp IPR001341 Asp_kinase_dom
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR005260 Aspartate kinase, monofunctional class
IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I
IPR011246 Bifunctional diaminopimelate decarboxylase/aspartate kinase
Contains IPR001048 Aspartate/glutamate/uridylate kinase
IPR002912 Amino acid-binding ACT
IPR018042 Aspartate kinase, conserved site
GO Term annotationHelp
Process GO:0008652 cellular amino acid biosynthetic process
Function GO:0004072 aspartate kinase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see [1].

Aspartate kinase (EC:2.7.2.4) (AK) catalyzes the first reaction in the aspartate pathway; the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine [2].

In bacteria there are three different aspartate kinase isozymes which differ in sensitivity to repression and inhibition by Lys, Met and Thr. AK1 and AK2 are bifunctional enzymes which both consist of an N-terminal AK domain and a C-terminal homoserine dehydrogenase domain. AK1 is involved in threonine biosynthesis and AK2, in that of methionine. The third isozyme, AK3 is monofunctional and involved in lysine synthesis. In archaea and plants there may be a single isozyme of AK which in plants is multifunctional.

This entry represents a region encoding aspartate kinase activity found in both the monofunctional and bifunctional enzymes.

Synonym(s): Aspartokinase

Structural linksHelp
Database linksHelp
PDBe-motif: PS00324
Enzyme: EC:2.7.2.4
PROSITE doc: PDOC00289
Blocks: IPB001341

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR001341 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O60163 Probable aspartokinase

P08660 Lysine-sensitive aspartokinase 3

P10869 Aspartokinase

Q57991 Probable aspartokinase

Q9LYU8 Aspartokinase 1, chloroplastic

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR001341 Aspartate kinase domain
IPR005260 Aspartate kinase, monofunctional class
IPR002912 Amino acid-binding ACT
IPR018042 Aspartate kinase, conserved site
IPR001048 Aspartate/glutamate/uridylate kinase
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain

PublicationsHelp
1. Viola RE.
The central enzymes of the aspartate family of amino acid biosynthesis.
Acc. Chem. Res. 34 339-49 2001 [PubMed: 11352712]
http://dx.doi.org/10.1021/ar000057q
2. Rafalski JA, Falco SC.
Structure of the yeast HOM3 gene which encodes aspartokinase.
J. Biol. Chem. 263 2146-51 1988 [PubMed: 2892836]
http://intl.jbc.org/cgi/reprint/263/5/2146.pdf

Additional ReadingHelp
Faehnle CR, Liu X, Pavlovsky A, Viola RE.
The initial step in the archaeal aspartate biosynthetic pathway catalyzed by a monofunctional aspartokinase.
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 62 2006 962-6 [PubMed: 17012784]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=17012784
Kotaka M, Ren J, Lockyer M, Hawkins AR, Stammers DK.
Structures of R- and T-state Escherichia coli aspartokinase III. Mechanisms of the allosteric transition and inhibition by lysine.
J. Biol. Chem. 281 2006 31544-52 [PubMed: 16905770]
http://dx.doi.org/10.1074/jbc.M605886200
Mas-Droux C, Curien G, Robert-Genthon M, Laurencin M, Ferrer JL, Dumas R.
A novel organization of ACT domains in allosteric enzymes revealed by the crystal structure of Arabidopsis aspartate kinase.
Plant Cell 18 2006 1681-92 [PubMed: 16731588]
http://dx.doi.org/10.1105/tpc.105.040451
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InterPro 23.1