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InterPro: IPR001304 C-type lectin

Protein matchesHelp
UniProtKB
Matches:
4490 proteins
AccessionHelp IPR001304 C-type_lectin
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR016186 C-type lectin-like
Found in IPR002352 Eosinophil major basic protein
IPR002353 Type II antifreeze protein
IPR003990 Pancreatitis-associated protein
IPR006228 Polycystin cation channel
IPR016316 Complement component C1q/Thrombomodulin
IPR016348 L-selectin
Contains IPR018378 C-type lectin, conserved site
GO Term annotationHelp
Function GO:0005488 binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Lectins occur in plants, animals, bacteria and viruses. Initially described for their carbohydrate-binding activity [1], they are now recognised as a more diverse group of proteins, some of which are involved in protein-protein, protein-lipid or protein-nucleic acid interactions [2]. There are at least twelve structural families of lectins:

  • C-type lectins, which are Ca+-dependent.
  • S-type (galectins), a widespread family of glycan-binding proteins [3].
  • I-type, which have an immunoglobulin-like fold and can recognise sialic acids, other sugars and glycosaminoglycans [4].
  • P-type, which bind phosphomannosyl receptors [5].
  • Pentraxins [6].
  • (Trout) egg lectins.
  • Calreticulin and calnexin, which act as molecular chaperones of the endoplasmic reticulum [7].
  • ERGIC-53 and VIP-36 [8].
  • Discoidins [9].
  • Eel aggutinins (fucolectins) [10].
  • Annexin lectins [11].
  • Fibrinogen-type lectins, which includes ficolins, tachylectins 5A and 5B, and Limax flavus (Spotted garden slug) agglutinin (these proteins have clear distinctions from one another, but they share a homologous fibrinogen-like domain used for carbohydrate binding).
  • Also unclassified orphan lectins, including amphoterin, Cel-II, complement factor H, thrombospondin, sailic acid-binding lectins, adherence lectin, and cytokins (such as tumour necrosis factor and several interleukins).

C-type lectins can be further divided into seven subgroups based on additional non-lectin domains and gene structure: (I) hyalectans, (II) asialoglycoprotein receptors, (III) collectins, (IV) selectins, (V) NK group transmembrane receptors, (VI) macrophage mannose receptors, and (VII) simple (single domain) lectins [12].

Therefore, lectins are a diverse group of proteins, both in terms of structure and activity. Carbohydrate binding ability may have evolved independently and sporadically in numerous unrelated families, where each evolved a structure that was conserved to fulfil some other activity and function. In general, animal lectins act as recognition molecules within the immune system, their functions involving defence against pathogens, cell trafficking, immune regulation and the prevention of autoimmunity [13].

Structural linksHelp
PDB - click here
SCOP: d.169.1.1 , h.1.1.1
Database linksHelp
PDBe-motif: PS00615
PROSITE doc: PDOC00537
PANDIT: PF00059
Blocks: IPB001304
Pfam Clan: CL0056.8

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR001304 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O46197 Accessory gland protein Acp29AB

O54709 NKG2-D type II integral membrane protein

P03205 Glycoprotein 42

P05451 Lithostathine-1-alpha

P34312 C-type lectin domain-containing protein 162

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR003990 Pancreatitis-associated protein
IPR018378 C-type lectin, conserved site
IPR001304 C-type lectin
IPR016187 C-type lectin fold
IPR016186 C-type lectin-like
IPR002353 Type II antifreeze protein
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. Sharon N, Lis H.
The structural basis for carbohydrate recognition by lectins.
Adv. Exp. Med. Biol. 491 1-16 2001 [PubMed: 14533786]
2. Kilpatrick DC.
Animal lectins: a historical introduction and overview.
Biochim. Biophys. Acta 1572 187-97 2002 [PubMed: 12223269]
http://dx.doi.org/10.1016/S0304-4165(02)00308-2
3. Elola MT, Wolfenstein-Todel C, Troncoso MF, Vasta GR, Rabinovich GA.
Galectins: matricellular glycan-binding proteins linking cell adhesion, migration, and survival.
Cell. Mol. Life Sci. 64 1679-700 2007 [PubMed: 17497244]
http://dx.doi.org/10.1007/s00018-007-7044-8
4. Angata T, Brinkman-Van der Linden E.
I-type lectins.
Biochim. Biophys. Acta 1572 294-316 2002 [PubMed: 12223277]
http://dx.doi.org/10.1016/S0304-4165(02)00316-1
5. Dahms NM, Hancock MK.
P-type lectins.
Biochim. Biophys. Acta 1572 317-40 2002 [PubMed: 12223278]
http://dx.doi.org/10.1016/S0304-4165(02)00317-3
6. Bottazzi B, Garlanda C, Salvatori G, Jeannin P, Manfredi A, Mantovani A.
Pentraxins as a key component of innate immunity.
Curr. Opin. Immunol. 18 10-5 2006 [PubMed: 16343883]
http://dx.doi.org/10.1016/j.coi.2005.11.009
7. Ireland BS, Niggemann M, Williams DB.
In vitro assays of the functions of calnexin and calreticulin, lectin chaperones of the endoplasmic reticulum.
Methods Mol. Biol. 347 331-42 2006 [PubMed: 17072021]
8. Arar C, Carpentier V, Le Caer JP, Monsigny M, Legrand A, Roche AC.
ERGIC-53, a membrane protein of the endoplasmic reticulum-Golgi intermediate compartment, is identical to MR60, an intracellular mannose-specific lectin of myelomonocytic cells.
J. Biol. Chem. 270 3551-3 1995 [PubMed: 7876089]
http://dx.doi.org/10.1074/jbc.270.8.3551
9. Kiedzierska A, Smietana K, Czepczynska H, Otlewski J.
Structural similarities and functional diversity of eukaryotic discoidin-like domains.
Biochim. Biophys. Acta 1774 1069-78 2007 [PubMed: 17702679]
10. Honda S, Kashiwagi M, Miyamoto K, Takei Y, Hirose S.
Multiplicity, structures, and endocrine and exocrine natures of eel fucose-binding lectins.
J. Biol. Chem. 275 33151-7 2000 [PubMed: 10924498]
http://dx.doi.org/10.1074/jbc.M002337200
11. Turnay J, Lecona E, Fernandez-Lizarbe S, Guzman-Aranguez A, Fernandez MP, Olmo N, Lizarbe MA.
Structure-function relationship in annexin A13, the founder member of the vertebrate family of annexins.
Biochem. J. 389 899-911 2005 [PubMed: 15813707]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=15813707&action=stream&blobtype=pdf
12. McGreal EP, Martinez-Pomares L, Gordon S.
Divergent roles for C-type lectins expressed by cells of the innate immune system.
Mol. Immunol. 41 1109-21 2004 [PubMed: 15476922]
http://dx.doi.org/10.1016/j.molimm.2004.06.013
13. Cambi A, Figdor CG.
Dual function of C-type lectin-like receptors in the immune system.
Curr. Opin. Cell Biol. 15 539-46 2003 [PubMed: 14519388]
http://dx.doi.org/10.1016/j.ceb.2003.08.004

Additional ReadingHelp
Jomori T, Natori S.
Molecular cloning of cDNA for lipopolysaccharide-binding protein from the hemolymph of the American cockroach, Periplaneta americana. Similarity of the protein with animal lectins and its acute phase expression.
J. Biol. Chem. 266 1991 13318-23 [PubMed: 1712779]
http://intl.jbc.org/cgi/content/abstract/266/20/13318
Hakansson K, Lim NK, Hoppe HJ, Reid KB.
Crystal structure of the trimeric alpha-helical coiled-coil and the three lectin domains of human lung surfactant protein D.
Structure 7 1999 255-64 [PubMed: 10368295]
http://dx.doi.org/10.1016/S0969-2126(99)80036-7
Lasky LA.
Selectins: interpreters of cell-specific carbohydrate information during inflammation.
Science 258 1992 964-9 [PubMed: 1439808]
http://www.sciencemag.org/cgi/content/abstract/258/5084/964
Drickamer K.
Two distinct classes of carbohydrate-recognition domains in animal lectins.
J. Biol. Chem. 263 1988 9557-60 [PubMed: 3290208]
http://intl.jbc.org/cgi/reprint/263/20/9557.pdf
Weis WI, Kahn R, Fourme R, Drickamer K, Hendrickson WA.
Structure of the calcium-dependent lectin domain from a rat mannose-binding protein determined by MAD phasing.
Science 254 1991 1608-15 [PubMed: 1721241]
http://www.sciencemag.org/cgi/content/abstract/254/5038/1608
Kaiser BK, Pizarro JC, Kerns J, Strong RK.
Structural basis for NKG2A/CD94 recognition of HLA-E.
Proc. Natl. Acad. Sci. U.S.A. 105 2008 6696-701 [PubMed: 18448674]
http://dx.doi.org/10.1073/pnas.0802736105
Petrie EJ, Clements CS, Lin J, Sullivan LC, Johnson D, Huyton T, Heroux A, Hoare HL, Beddoe T, Reid HH, Wilce MC, Brooks AG, Rossjohn J.
CD94-NKG2A recognition of human leukocyte antigen (HLA)-E bound to an HLA class I leader sequence.
J. Exp. Med. 205 2008 725-35 [PubMed: 18332182]
http://dx.doi.org/10.1084/jem.20072525
Wang L, Brauner JW, Mao G, Crouch E, Seaton B, Head J, Smith K, Flach CR, Mendelsohn R.
Interaction of recombinant surfactant protein D with lipopolysaccharide: conformation and orientation of bound protein by IRRAS and simulations.
Biochemistry 47 2008 8103-13 [PubMed: 18620419]
http://dx.doi.org/10.1021/bi800626h
Spiess M.
The asialoglycoprotein receptor: a model for endocytic transport receptors.
Biochemistry 29 1990 10009-18 [PubMed: 2125488]
http://dx.doi.org/10.1021/bi00495a001
Wang H, Head J, Kosma P, Brade H, Muller-Loennies S, Sheikh S, McDonald B, Smith K, Cafarella T, Seaton B, Crouch E.
Recognition of heptoses and the inner core of bacterial lipopolysaccharides by surfactant protein d.
Biochemistry 47 2008 710-20 [PubMed: 18092821]
http://dx.doi.org/10.1021/bi7020553
Ng NF, Hew CL.
Structure of an antifreeze polypeptide from the sea raven. Disulfide bonds and similarity to lectin-binding proteins.
J. Biol. Chem. 267 1992 16069-75 [PubMed: 1644794]
http://intl.jbc.org/cgi/reprint/267/23/16069.pdf
Deng L, Cho S, Malchiodi EL, Kerzic MC, Dam J, Mariuzza RA.
Molecular architecture of the major histocompatibility complex class I-binding site of Ly49 natural killer cell receptors.
J. Biol. Chem. 283 2008 16840-9 [PubMed: 18426793]
http://dx.doi.org/10.1074/jbc.M801526200
Drickamer K.
Evolution of Ca(2+)-dependent animal lectins.
Prog. Nucleic Acid Res. Mol. Biol. 45 1993 207-32 [PubMed: 8341801]
Siegelman M.
Sweetening the selectin pot.
Curr. Biol. 1 1991 125-8 [PubMed: 15336187]
http://dx.doi.org/10.1016/0960-9822(91)90299-C
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InterPro 24.0