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InterPro: IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit

Protein matchesHelp
UniProtKB
Matches:
2380 proteins
AccessionHelp IPR001268 NADH_UbQ_OxRdtase_30kDa_su
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Children IPR010218 NADH (or F420H2) dehydrogenase, subunit C
Found in IPR012179 [NiFe]-hydrogenase-3-type complex Ech, subunit EchD
Contains IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site
GO Term annotationHelp
Process GO:0055114 oxidation reduction
Function GO:0008137 NADH dehydrogenase (ubiquinone) activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

NADH:ubiquinone oxidoreductase (complex I) (EC:1.6.5.3) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) [1]. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [2], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins [3]. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters [4]. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [4, 5]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I [6].

The 30 kDa subunit from NADH:ubiquinone oxidoreductase is found in both eukaryotes and prokaryotes. In mammals and in Neurospora crassa, it is nuclear-encoded as a precursor form with a transit peptide, while in Paramecium (protein P1), in the Dictyostelium discoideum (Slime mold) it is mitochondrial-encoded and it is chloroplast-encoded in various higher plants. It is also present in bacteria.

Structural linksHelp
SCOP: d.307.1.1
Database linksHelp
PDBe-motif: PS00542
Enzyme: EC:1.6
PROSITE doc: PDOC00468
PANDIT: PF00329
Blocks: IPB001268

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR001268 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O75489 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial

P0C338 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

P19125 NAD(P)H-quinone oxidoreductase subunit J

P56754 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

Q9DCT2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit
IPR010218 NADH (or F420H2) dehydrogenase, subunit C
IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site
SWISS-MODEL
ModBase

PublicationsHelp
1. Walker JE.
The NADH:ubiquinone oxidoreductase (complex I) of respiratory chains.
Q. Rev. Biophys. 25 253-324 1992 [PubMed: 1470679]
2. Friedrich T, Scheide D.
The respiratory complex I of bacteria, archaea and eukarya and its module common with membrane-bound multisubunit hydrogenases.
FEBS Lett. 479 1-5 2000 [PubMed: 10940377]
http://dx.doi.org/10.1016/S0014-5793(00)01867-6
3. Schneider D, Pohl T, Walter J, Dorner K, Kohlstadt M, Berger A, Spehr V, Friedrich T.
Assembly of the Escherichia coli NADH:ubiquinone oxidoreductase (complex I).
Biochim. Biophys. Acta 1777 735-9 2008 [PubMed: 18394423]
http://dx.doi.org/10.1016/j.bbabio.2008.03.003
4. Remacle C, Barbieri MR, Cardol P, Hamel PP.
Eukaryotic complex I: functional diversity and experimental systems to unravel the assembly process.
Mol. Genet. Genomics 280 93-110 2008 [PubMed: 18563446]
http://dx.doi.org/10.1007/s00438-008-0350-5
5. Vogel RO, Smeitink JA, Nijtmans LG.
Human mitochondrial complex I assembly: a dynamic and versatile process.
Biochim. Biophys. Acta 1767 1215-27 2007 [PubMed: 17854760]
http://dx.doi.org/10.1016/j.bbabio.2007.07.008
6. Zickermann V, Drose S, Tocilescu MA, Zwicker K, Kerscher S, Brandt U.
Challenges in elucidating structure and mechanism of proton pumping NADH:ubiquinone oxidoreductase (complex I).
J. Bioenerg. Biomembr. 40 475-83 2008 [PubMed: 18982432]
http://dx.doi.org/10.1007/s10863-008-9171-9

Additional ReadingHelp
Sazanov LA, Hinchliffe P.
Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus.
Science 311 2006 1430-6 [PubMed: 16469879]
http://dx.doi.org/10.1126/science.1123809
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InterPro 23.1