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InterPro: IPR001117 Multicopper oxidase, type 1
Protein matches
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UniProtKB Matches: 5962 proteins |
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Accession
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IPR001117 Cu-oxidase |
Type
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Domain |
Signatures
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InterPro Relationships
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Found in
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IPR006376 Copper-resistance protein CopA
IPR008972 Cupredoxin
IPR012746 Nitrite reductase, copper containing
IPR014707 Coagulation factor VIII
IPR017760 L-ascorbate oxidase, plants
IPR017761 Laccase
IPR017762 L-ascorbate oxidase, fungi
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GO Term annotation
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Function
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GO:0016491 oxidoreductase activity
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InterPro annotation
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Entry Details in BioMart
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Abstract
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Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment.
Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water [1]. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [2, 3]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel [4]. Multicopper oxidases include:
- Ceruloplasmin (EC:1.16.3.1) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase.
- Laccase (EC:1.10.3.2) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance [4].
- Ascorbate oxidase (EC:1.10.3.3), a 3-domain enzyme found in higher plants.
- Nitrite reductase (EC:1.7.2.1), a 2-domain enzyme containing type-1 and type-2 copper centres [5, 6].
In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) [7]; yeast FET3 required for ferrous iron uptake [8]; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08.
This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.
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Structural links
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Database links
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Pfam Clan: CL0026.16
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Publications
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1.
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Bento I, Martins LO, Gato Lopes G, Armenia Carrondo M, Lindley PF.
Dioxygen reduction by multi-copper oxidases; a structural perspective.
3507-13 2005
[PubMed: 16234932]
http://dx.doi.org/10.1039/b504806k
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2.
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Messerschmidt A, Huber R.
The blue oxidases, ascorbate oxidase, laccase and ceruloplasmin. Modelling and structural relationships.
Eur. J. Biochem. 187 341-52 1990
[PubMed: 2404764]
http://dx.doi.org/10.1111/j.1432-1033.1990.tb15311.x
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3.
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Ouzounis C, Sander C.
A structure-derived sequence pattern for the detection of type I copper binding domains in distantly related proteins.
FEBS Lett. 279 73-8 1991
[PubMed: 1995346]
http://dx.doi.org/10.1016/0014-5793(91)80254-Z
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4.
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Roberts SA, Weichsel A, Grass G, Thakali K, Hazzard JT, Tollin G, Rensing C, Montfort WR.
Crystal structure and electron transfer kinetics of CueO, a multicopper oxidase required for copper homeostasis in Escherichia coli.
Proc. Natl. Acad. Sci. U.S.A. 99 2766-71 2002
[PubMed: 11867755]
http://dx.doi.org/10.1073/pnas.052710499
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5.
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Nakamura K, Kawabata T, Yura K, Go N.
Novel types of two-domain multi-copper oxidases: possible missing links in the evolution.
FEBS Lett. 553 239-44 2003
[PubMed: 14572631]
http://dx.doi.org/10.1016/S0014-5793(03)01000-7
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6.
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Suzuki S, Kataoka K, Yamaguchi K.
Metal coordination and mechanism of multicopper nitrite reductase.
Acc. Chem. Res. 33 728-35 2000
[PubMed: 11041837]
http://dx.doi.org/10.1021/ar9900257
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7.
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Mann KG, Jenny RJ, Krishnaswamy S.
Cofactor proteins in the assembly and expression of blood clotting enzyme complexes.
Annu. Rev. Biochem. 57 915-56 1988
[PubMed: 3052293]
http://dx.doi.org/10.1146/annurev.bi.57.070188.004411
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8.
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Askwith C, Eide D, Van Ho A, Bernard PS, Li L, Davis-Kaplan S, Sipe DM, Kaplan J.
The FET3 gene of S. cerevisiae encodes a multicopper oxidase required for ferrous iron uptake.
Cell 76 403-10 1994
[PubMed: 8293473]
http://dx.doi.org/10.1016/0092-8674(94)90346-8
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Additional Reading
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Wijma HJ, MacPherson I, Farver O, Tocheva EI, Pecht I, Verbeet MP, Murphy ME, Canters GW.
Effect of the methionine ligand on the reorganization energy of the type-1 copper site of nitrite reductase.
J. Am. Chem. Soc. 129 2007 519-25
[PubMed: 17227014]
http://dx.doi.org/10.1021/ja064763j
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Hakulinen N, Andberg M, Kallio J, Koivula A, Kruus K, Rouvinen J.
A near atomic resolution structure of a Melanocarpus albomyces laccase.
J. Struct. Biol. 162 2008 29-39
[PubMed: 18249560]
http://dx.doi.org/10.1016/j.jsb.2007.12.003
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Ellis MJ, Buffey SG, Hough MA, Hasnain SS.
On-line optical and X-ray spectroscopies with crystallography: an integrated approach for determining metalloprotein structures in functionally well defined states.
15 2008 433-9
[PubMed: 18728313]
http://dx.doi.org/10.1107/S0909049508014945
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Tocheva EI, Eltis LD, Murphy ME.
Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules.
Biochemistry 47 2008 4452-60
[PubMed: 18358002]
http://dx.doi.org/10.1021/bi7020537
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Messerschmidt A, Ladenstein R, Huber R, Bolognesi M, Avigliano L, Petruzzelli R, Rossi A, Finazzi-Agro A.
Refined crystal structure of ascorbate oxidase at 1.9 A resolution.
J. Mol. Biol. 224 1992 179-205
[PubMed: 1548698]
http://dx.doi.org/10.1016/0022-2836(92)90583-6
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Hough MA, Antonyuk SV, Strange RW, Eady RR, Hasnain SS.
Crystallography with online optical and X-ray absorption spectroscopies demonstrates an ordered mechanism in copper nitrite reductase.
J. Mol. Biol. 378 2008 353-61
[PubMed: 18353369]
http://dx.doi.org/10.1016/j.jmb.2008.01.097
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InterPro 24.0
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