 |
InterPro: IPR000975 Interleukin-1
Protein matches
|
UniProtKB Matches: 325 proteins |
|
Accession
|
IPR000975 Interleukin_1 |
Type
|
Family |
Signatures
|
|
InterPro Relationships
|
|
Parent
|
IPR008996 Cytokine, IL-1-like
|
|
Children
|
IPR003294 Interleukin-1, alpha/beta
IPR003297 Interleukin-1 receptor antagonist IL1RA
IPR015529 Interleukin 18
|
|
Contains
|
IPR020877 Interleukin-1 conserved site
|
GO Term annotation
|
|
Component
|
GO:0005615 extracellular space
|
|
InterPro annotation
|
|
Entry Details in BioMart
|
Abstract
|
Interleukin-1 alpha and interleukin-1 beta (IL-1 alpha and IL-1 beta) are
cytokines that participate in the regulation of immune responses, inflammatory reactions, and hematopoiesis [1]. Two types of IL-1 receptor, each with three extracellular immunoglobulin (Ig)-like domains, limited sequence similarity (28%) and different pharmacological characteristics have been cloned from mouse and human cell lines: these have been termed type I and type II receptors [2]. The receptors both exist in transmembrane (TM) and soluble forms: the soluble IL-1 receptor is thought to be post-translationally derived from cleavage of the extracellular portion of the membrane receptors.
Both IL-1 receptors appear to be well conserved in evolution, and map to the
same chromosomal location [3]. The receptors can both bind all three forms of IL-1 (IL-1 alpha, IL-1 beta and IL-1RA).
The crystal structures of IL1A and IL1B [4] have been solved, showing them to share the same 12-stranded beta-sheet structure as both the heparin binding growth factors and the Kunitz-type soybean trypsin inhibitors [5]. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Several regions, especially the loop between strands 4 and 5, have been implicated in receptor binding.
The Vaccinia virus genes B15R and B18R each encode proteins with N-terminal
hydrophobic sequences, possible sites for attachment of N-linked carbohydrate and a short C-terminal hydrophobic domain [6]. These properties
are consistent with the mature proteins being either virion, cell surface or secretory glycoproteins. Protein sequence comparisons reveal that the gene products are related to each other (20% identity) and to the Ig superfamily. The highest degree of similarity is to the human and murine interleukin-1 receptors, although both proteins are related to a wide range of Ig superfamily members, including the interleukin-6 receptor. A novel method for virus immune evasion has been proposed in which the product of one or both of these proteins may bind interleukin-1 and/or interleukin-6, preventing these cytokines reaching their natural receptors [6]. A similar gene product from Cowpox virus (CPV) has also been shown to specifically bind murine IL-1 beta [7]. This entry represents Interleukin-1.
|
Structural links
|
|
Database links
|
Pfam Clan: CL0066.10
|
Example proteins
|
A4UYK8 Interleukin-1 beta
P01583 Interleukin-1 alpha
P10749 Interleukin-1 beta
Q4FPA9 Isoleucyl-tRNA synthetase
Q54DD2 Thimet-like oligopeptidase
More proteins
Example Proteins Key
| InterPro entry accession number/name and structure databases |
Colour code |
| IPR013155 |
Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding |
 |
| IPR000975 |
Interleukin-1 |
 |
| IPR014729 |
Rossmann-like alpha/beta/alpha sandwich fold |
 |
| IPR001412 |
Aminoacyl-tRNA synthetase, class I, conserved site |
 |
| IPR020877 |
Interleukin-1 conserved site |
 |
| IPR001567 |
Peptidase M3A/M3B, thimet/oligopeptidase F |
 |
| IPR003502 |
Interleukin-1 propeptide |
 |
| IPR002300 |
Aminoacyl-tRNA synthetase, class Ia |
 |
| IPR003296 |
Interleukin-1, beta IL1B |
 |
| IPR002301 |
Isoleucyl-tRNA synthetase, class Ia |
 |
| IPR003295 |
Interleukin-1, alpha IL1A |
 |
| IPR003294 |
Interleukin-1, alpha/beta |
 |
| IPR002348 |
Interleukin 1/heparin-binding growth factor |
 |
| IPR018353 |
Isoleucyl-tRNA synthetase |
 |
| IPR009080 |
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding |
 |
| IPR008996 |
Cytokine, IL-1-like |
 |
| IPR009008 |
Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing |
 |
| IPR015905 |
Isoleucyl-tRNA synthetase, class Ia, N-terminal |
 |
|
PDB Chain |
 |
|
ModBase |
 |
|
CATH Domain |
 |
|
SWISS-MODEL |
 |
|
SCOP Domain |
 |
|
Publications
|
|
1.
|
Sims JE, March CJ, Cosman D, Widmer MB, MacDonald HR, McMahan CJ, Grubin CE, Wignall JM, Jackson JL, Call SM.
cDNA expression cloning of the IL-1 receptor, a member of the immunoglobulin superfamily.
Science 241 585-9 1988
[PubMed: 2969618]
http://www.sciencemag.org/cgi/content/abstract/241/4865/585
|
|
2.
|
Liu C, Hart RP, Liu XJ, Clevenger W, Maki RA, De Souza EB.
Cloning and characterization of an alternatively processed human type II interleukin-1 receptor mRNA.
J. Biol. Chem. 271 20965-72 1996
[PubMed: 8702856]
http://dx.doi.org/10.1074/jbc.271.34.20965
|
|
3.
|
McMahan CJ, Slack JL, Mosley B, Cosman D, Lupton SD, Brunton LL, Grubin CE, Wignall JM, Jenkins NA, Brannan CI.
A novel IL-1 receptor, cloned from B cells by mammalian expression, is expressed in many cell types.
EMBO J. 10 2821-32 1991
[PubMed: 1833184]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=1833184&action=stream&blobtype=pdf
|
|
4.
|
Priestle JP, Schar HP, Grutter MG.
Crystallographic refinement of interleukin 1 beta at 2.0 A resolution.
Proc. Natl. Acad. Sci. U.S.A. 86 9667-71 1989
[PubMed: 2602367]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=2602367&action=stream&blobtype=pdf
|
|
5.
|
Murzin AG, Lesk AM, Chothia C.
beta-Trefoil fold. Patterns of structure and sequence in the Kunitz inhibitors interleukins-1 beta and 1 alpha and fibroblast growth factors.
J. Mol. Biol. 223 531-43 1992
[PubMed: 1738162]
http://dx.doi.org/10.1016/0022-2836(92)90668-A
|
|
6.
|
Smith GL, Chan YS.
Two vaccinia virus proteins structurally related to the interleukin-1 receptor and the immunoglobulin superfamily.
J. Gen. Virol. 72 ( Pt 3) 511-8 1991
[PubMed: 1826022]
|
|
7.
|
Spriggs MK, Hruby DE, Maliszewski CR, Pickup DJ, Sims JE, Buller RM, VanSlyke J.
Vaccinia and cowpox viruses encode a novel secreted interleukin-1-binding protein.
Cell 71 145-52 1992
[PubMed: 1339315]
http://dx.doi.org/10.1016/0092-8674(92)90273-F
|
Additional Reading
|
|
Rothwell NJ, Luheshi GN.
Interleukin 1 in the brain: biology, pathology and therapeutic target.
Trends Neurosci. 23 2000 618-25
[PubMed: 11137152]
http://dx.doi.org/10.1016/S0166-2236(00)01661-1
|
|
Adamek DH, Guerrero L, Blaber M, Caspar DL.
Structural and energetic consequences of mutations in a solvated hydrophobic cavity.
J. Mol. Biol. 346 2005 307-18
[PubMed: 15663946]
http://dx.doi.org/10.1016/j.jmb.2004.11.046
|
|
Kato Z, Jee J, Shikano H, Mishima M, Ohki I, Ohnishi H, Li A, Hashimoto K, Matsukuma E, Omoya K, Yamamoto Y, Yoneda T, Hara T, Kondo N, Shirakawa M.
The structure and binding mode of interleukin-18.
Nat. Struct. Biol. 10 2003 966-71
[PubMed: 14528293]
http://dx.doi.org/10.1038/nsb993
|
|
Rudolph MG, Kelker MS, Schneider TR, Yeates TO, Oseroff V, Heidary DK, Jennings PA, Wilson IA.
Use of multiple anomalous dispersion to phase highly merohedrally twinned crystals of interleukin-1beta.
Acta Crystallogr. D Biol. Crystallogr. 59 2003 290-8
[PubMed: 12554939]
http://dx.doi.org/10.1107/S0907444902021704
|
|
Dunn EF, Gay NJ, Bristow AF, Gearing DP, O'Neill LA, Pei XY.
High-resolution structure of murine interleukin 1 homologue IL-1F5 reveals unique loop conformations for receptor binding specificity.
Biochemistry 42 2003 10938-44
[PubMed: 12974628]
http://dx.doi.org/10.1021/bi0341197
|
|
Quillin ML, Wingfield PT, Matthews BW.
Determination of solvent content in cavities in IL-1beta using experimentally phased electron density.
Proc. Natl. Acad. Sci. U.S.A. 103 2006 19749-53
[PubMed: 17179045]
http://dx.doi.org/10.1073/pnas.0609442104
|
|
Eisenberg SP, Brewer MT, Verderber E, Heimdal P, Brandhuber BJ, Thompson RC.
Interleukin 1 receptor antagonist is a member of the interleukin 1 gene family: evolution of a cytokine control mechanism.
Proc. Natl. Acad. Sci. U.S.A. 88 1991 5232-6
[PubMed: 1828896]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=1828896&action=stream&blobtype=pdf
|
|