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InterPro: IPR000975 Interleukin-1

Protein matchesHelp
UniProtKB
Matches:
325 proteins
AccessionHelp IPR000975 Interleukin_1
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR008996 Cytokine, IL-1-like
Children IPR003294 Interleukin-1, alpha/beta
IPR003297 Interleukin-1 receptor antagonist IL1RA
IPR015529 Interleukin 18
Contains IPR020877 Interleukin-1 conserved site
GO Term annotationHelp
Component GO:0005615 extracellular space
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Interleukin-1 alpha and interleukin-1 beta (IL-1 alpha and IL-1 beta) are cytokines that participate in the regulation of immune responses, inflammatory reactions, and hematopoiesis [1]. Two types of IL-1 receptor, each with three extracellular immunoglobulin (Ig)-like domains, limited sequence similarity (28%) and different pharmacological characteristics have been cloned from mouse and human cell lines: these have been termed type I and type II receptors [2]. The receptors both exist in transmembrane (TM) and soluble forms: the soluble IL-1 receptor is thought to be post-translationally derived from cleavage of the extracellular portion of the membrane receptors.

Both IL-1 receptors appear to be well conserved in evolution, and map to the same chromosomal location [3]. The receptors can both bind all three forms of IL-1 (IL-1 alpha, IL-1 beta and IL-1RA).

The crystal structures of IL1A and IL1B [4] have been solved, showing them to share the same 12-stranded beta-sheet structure as both the heparin binding growth factors and the Kunitz-type soybean trypsin inhibitors [5]. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Several regions, especially the loop between strands 4 and 5, have been implicated in receptor binding.

The Vaccinia virus genes B15R and B18R each encode proteins with N-terminal hydrophobic sequences, possible sites for attachment of N-linked carbohydrate and a short C-terminal hydrophobic domain [6]. These properties are consistent with the mature proteins being either virion, cell surface or secretory glycoproteins. Protein sequence comparisons reveal that the gene products are related to each other (20% identity) and to the Ig superfamily. The highest degree of similarity is to the human and murine interleukin-1 receptors, although both proteins are related to a wide range of Ig superfamily members, including the interleukin-6 receptor. A novel method for virus immune evasion has been proposed in which the product of one or both of these proteins may bind interleukin-1 and/or interleukin-6, preventing these cytokines reaching their natural receptors [6]. A similar gene product from Cowpox virus (CPV) has also been shown to specifically bind murine IL-1 beta [7].

This entry represents Interleukin-1.

Structural linksHelp
SCOP: b.42.1.2
CATH: 2.80.10.50
Database linksHelp
PDBe-motif: PS00253
PROSITE doc: PDOC00226
PANDIT: PF00340
Blocks: IPB000975
Pfam Clan: CL0066.10

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR000975 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A4UYK8 Interleukin-1 beta

P01583 Interleukin-1 alpha

P10749 Interleukin-1 beta

Q4FPA9 Isoleucyl-tRNA synthetase

Q54DD2 Thimet-like oligopeptidase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding
IPR000975 Interleukin-1
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site
IPR020877 Interleukin-1 conserved site
IPR001567 Peptidase M3A/M3B, thimet/oligopeptidase F
IPR003502 Interleukin-1 propeptide
IPR002300 Aminoacyl-tRNA synthetase, class Ia
IPR003296 Interleukin-1, beta IL1B
IPR002301 Isoleucyl-tRNA synthetase, class Ia
IPR003295 Interleukin-1, alpha IL1A
IPR003294 Interleukin-1, alpha/beta
IPR002348 Interleukin 1/heparin-binding growth factor
IPR018353 Isoleucyl-tRNA synthetase
IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding
IPR008996 Cytokine, IL-1-like
IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing
IPR015905 Isoleucyl-tRNA synthetase, class Ia, N-terminal
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Sims JE, March CJ, Cosman D, Widmer MB, MacDonald HR, McMahan CJ, Grubin CE, Wignall JM, Jackson JL, Call SM.
cDNA expression cloning of the IL-1 receptor, a member of the immunoglobulin superfamily.
Science 241 585-9 1988 [PubMed: 2969618]
http://www.sciencemag.org/cgi/content/abstract/241/4865/585
2. Liu C, Hart RP, Liu XJ, Clevenger W, Maki RA, De Souza EB.
Cloning and characterization of an alternatively processed human type II interleukin-1 receptor mRNA.
J. Biol. Chem. 271 20965-72 1996 [PubMed: 8702856]
http://dx.doi.org/10.1074/jbc.271.34.20965
3. McMahan CJ, Slack JL, Mosley B, Cosman D, Lupton SD, Brunton LL, Grubin CE, Wignall JM, Jenkins NA, Brannan CI.
A novel IL-1 receptor, cloned from B cells by mammalian expression, is expressed in many cell types.
EMBO J. 10 2821-32 1991 [PubMed: 1833184]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=1833184&action=stream&blobtype=pdf
4. Priestle JP, Schar HP, Grutter MG.
Crystallographic refinement of interleukin 1 beta at 2.0 A resolution.
Proc. Natl. Acad. Sci. U.S.A. 86 9667-71 1989 [PubMed: 2602367]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=2602367&action=stream&blobtype=pdf
5. Murzin AG, Lesk AM, Chothia C.
beta-Trefoil fold. Patterns of structure and sequence in the Kunitz inhibitors interleukins-1 beta and 1 alpha and fibroblast growth factors.
J. Mol. Biol. 223 531-43 1992 [PubMed: 1738162]
http://dx.doi.org/10.1016/0022-2836(92)90668-A
6. Smith GL, Chan YS.
Two vaccinia virus proteins structurally related to the interleukin-1 receptor and the immunoglobulin superfamily.
J. Gen. Virol. 72 ( Pt 3) 511-8 1991 [PubMed: 1826022]
7. Spriggs MK, Hruby DE, Maliszewski CR, Pickup DJ, Sims JE, Buller RM, VanSlyke J.
Vaccinia and cowpox viruses encode a novel secreted interleukin-1-binding protein.
Cell 71 145-52 1992 [PubMed: 1339315]
http://dx.doi.org/10.1016/0092-8674(92)90273-F

Additional ReadingHelp
Rothwell NJ, Luheshi GN.
Interleukin 1 in the brain: biology, pathology and therapeutic target.
Trends Neurosci. 23 2000 618-25 [PubMed: 11137152]
http://dx.doi.org/10.1016/S0166-2236(00)01661-1
Adamek DH, Guerrero L, Blaber M, Caspar DL.
Structural and energetic consequences of mutations in a solvated hydrophobic cavity.
J. Mol. Biol. 346 2005 307-18 [PubMed: 15663946]
http://dx.doi.org/10.1016/j.jmb.2004.11.046
Kato Z, Jee J, Shikano H, Mishima M, Ohki I, Ohnishi H, Li A, Hashimoto K, Matsukuma E, Omoya K, Yamamoto Y, Yoneda T, Hara T, Kondo N, Shirakawa M.
The structure and binding mode of interleukin-18.
Nat. Struct. Biol. 10 2003 966-71 [PubMed: 14528293]
http://dx.doi.org/10.1038/nsb993
Rudolph MG, Kelker MS, Schneider TR, Yeates TO, Oseroff V, Heidary DK, Jennings PA, Wilson IA.
Use of multiple anomalous dispersion to phase highly merohedrally twinned crystals of interleukin-1beta.
Acta Crystallogr. D Biol. Crystallogr. 59 2003 290-8 [PubMed: 12554939]
http://dx.doi.org/10.1107/S0907444902021704
Dunn EF, Gay NJ, Bristow AF, Gearing DP, O'Neill LA, Pei XY.
High-resolution structure of murine interleukin 1 homologue IL-1F5 reveals unique loop conformations for receptor binding specificity.
Biochemistry 42 2003 10938-44 [PubMed: 12974628]
http://dx.doi.org/10.1021/bi0341197
Quillin ML, Wingfield PT, Matthews BW.
Determination of solvent content in cavities in IL-1beta using experimentally phased electron density.
Proc. Natl. Acad. Sci. U.S.A. 103 2006 19749-53 [PubMed: 17179045]
http://dx.doi.org/10.1073/pnas.0609442104
Eisenberg SP, Brewer MT, Verderber E, Heimdal P, Brandhuber BJ, Thompson RC.
Interleukin 1 receptor antagonist is a member of the interleukin 1 gene family: evolution of a cytokine control mechanism.
Proc. Natl. Acad. Sci. U.S.A. 88 1991 5232-6 [PubMed: 1828896]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=1828896&action=stream&blobtype=pdf
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InterPro 23.1