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InterPro: IPR000639 Epoxide hydrolase-like

Protein matchesHelp
UniProtKB
Matches:
4811 proteins
AccessionHelp IPR000639 Epox_hydrolase-like
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR000073 Alpha/beta hydrolase fold-1
Found in IPR016292 Epoxide hydrolase
IPR017209 Uncharacterised conserved protein UCP037445, alpha/beta hydrolase
IPR017727 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, BphD
GO Term annotationHelp
Function GO:0003824 catalytic activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The alpha/beta hydrolase fold is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices [1]. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. The epoxide hydrolases (EH) add water to epoxides, forming the corresponding diol. On the basis of sequence similarity, it has been proposed that the mammalian soluble EHs contain 2 evolutionarily distinct domains, the N-terminal domain is similar to bacterial haloacid dehalogenase, while the C-terminal domain is similar to soluble plant EH, microsomal EH, and bacterial haloalkane dehalogenase (HLD) [2]. The mechanism of HLD, established by X-ray crystallographic analysis of an HDL-substrate intermediate [3], involves nucleophilic attack of Asp-124 on the halogen-substituted terminal carbon of the substrate, forming a covalently-bound ester intermediate. The Asp-260/His-289 pair activate a water molecule that hydrolyses the ester intermediate to release the product. The similarity of EH to HLD is important for deducing a catalytic mechanism for EH. Mutagenesis experiments on murine soluble EH confirmed the crucial role of nucleophile Asp-333 and His-523 in the catalytic mechanism and the importance of conserved His-263 and His-332 [4].

Structural linksHelp
PDB - click here
CATH: 3.40.50.1820
Database linksHelp
Enzyme: EC:3
Blocks: IPB000639

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR000639 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O31158 Non-heme chloroperoxidase

P34913 Epoxide hydrolase 2

P34914 Epoxide hydrolase 2

Q55921 Putative non-heme chloroperoxidase

Q9BIB3 Probable protein phosphatase methylesterase 1

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR006402 HAD-superfamily hydrolase, subfamily IA, variant 3
IPR011945 Predicted HAD-superfamily phosphatase, subfamily IA/Epoxide hydrolase, N-terminal
IPR005834 Haloacid dehalogenase-like hydrolase
IPR000639 Epoxide hydrolase-like
IPR000073 Alpha/beta hydrolase fold-1
IPR016812 Protein phosphatase methylesterase, eukaryotic
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. Ollis DL, Cheah E, Cygler M, Dijkstra B, Frolow F, Franken SM, Harel M, Remington SJ, Silman I, Schrag J.
The alpha/beta hydrolase fold.
Protein Eng. 5 197-211 1992 [PubMed: 1409539]
http://dx.doi.org/10.1093/protein/5.3.197
2. Beetham JK, Grant D, Arand M, Garbarino J, Kiyosue T, Pinot F, Oesch F, Belknap WR, Shinozaki K, Hammock BD.
Gene evolution of epoxide hydrolases and recommended nomenclature.
DNA Cell Biol. 14 61-71 1995 [PubMed: 7832993]
3. Verschueren KH, Seljee F, Rozeboom HJ, Kalk KH, Dijkstra BW.
Crystallographic analysis of the catalytic mechanism of haloalkane dehalogenase.
Nature 363 693-8 1993 [PubMed: 8515812]
http://dx.doi.org/10.1038/363693a0
4. Pinot F, Grant DF, Beetham JK, Parker AG, Borhan B, Landt S, Jones AD, Hammock BD.
Molecular and biochemical evidence for the involvement of the Asp-333-His-523 pair in the catalytic mechanism of soluble epoxide hydrolase.
J. Biol. Chem. 270 7968-74 1995 [PubMed: 7713895]
http://dx.doi.org/10.1074/jbc.270.14.7968

Additional ReadingHelp
Liu X, Hanson BL, Langan P, Viola RE.
The effect of deuteration on protein structure: a high-resolution comparison of hydrogenous and perdeuterated haloalkane dehalogenase.
Acta Crystallogr. D Biol. Crystallogr. 63 2007 1000-8 [PubMed: 17704569]
http://dx.doi.org/10.1107/S0907444907037705
Mazumdar PA, Hulecki JC, Cherney MM, Garen CR, James MN.
X-ray crystal structure of Mycobacterium tuberculosis haloalkane dehalogenase Rv2579.
Biochim. Biophys. Acta 1784 2008 351-62 [PubMed: 18062934]
Horsman GP, Bhowmik S, Seah SY, Kumar P, Bolin JT, Eltis LD.
The tautomeric half-reaction of BphD, a C-C bond hydrolase. Kinetic and structural evidence supporting a key role for histidine 265 of the catalytic triad.
J. Biol. Chem. 282 2007 19894-904 [PubMed: 17442675]
http://dx.doi.org/10.1074/jbc.M702237200
Monincova M, Prokop Z, Vevodova J, Nagata Y, Damborsky J.
Weak activity of haloalkane dehalogenase LinB with 1,2,3-trichloropropane revealed by X-Ray crystallography and microcalorimetry.
Appl. Environ. Microbiol. 73 2007 2005-8 [PubMed: 17259360]
http://dx.doi.org/10.1128/AEM.02416-06
Loening AM, Fenn TD, Gambhir SS.
Crystal structures of the luciferase and green fluorescent protein from Renilla reniformis.
J. Mol. Biol. 374 2007 1017-28 [PubMed: 17980388]
http://dx.doi.org/10.1016/j.jmb.2007.09.078
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InterPro 23.1