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InterPro: IPR000639 Epoxide hydrolase-like
Protein matches
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UniProtKB Matches: 4811 proteins |
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Accession
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IPR000639 Epox_hydrolase-like |
Type
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Domain |
Signatures
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InterPro Relationships
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Parent
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IPR000073 Alpha/beta hydrolase fold-1
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Found in
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IPR016292 Epoxide hydrolase
IPR017209 Uncharacterised conserved protein UCP037445, alpha/beta hydrolase
IPR017727 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, BphD
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GO Term annotation
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Function
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GO:0003824 catalytic activity
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InterPro annotation
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Entry Details in BioMart
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Abstract
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The alpha/beta hydrolase fold is common to a number of hydrolytic enzymes of widely differing phylogenetic
origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing
8 strands connected by helices [1]. The enzymes are believed to have diverged from a common ancestor,
preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne
on loops, which are the best conserved structural features of the fold. The epoxide hydrolases (EH) add water to
epoxides, forming the corresponding diol. On the basis of sequence similarity, it has been proposed that the
mammalian soluble EHs contain 2 evolutionarily distinct domains, the N-terminal domain is similar to bacterial
haloacid dehalogenase, while the C-terminal domain is similar to soluble plant EH, microsomal EH, and bacterial
haloalkane dehalogenase (HLD) [2]. The mechanism of HLD, established by X-ray crystallographic analysis
of an HDL-substrate intermediate [3], involves nucleophilic attack of Asp-124 on the halogen-substituted
terminal carbon of the substrate, forming a covalently-bound ester intermediate. The Asp-260/His-289 pair
activate a water molecule that hydrolyses the ester intermediate to release the product. The similarity of EH to
HLD is important for deducing a catalytic mechanism for EH. Mutagenesis experiments on murine soluble EH
confirmed the crucial role of nucleophile Asp-333 and His-523 in the catalytic mechanism and the importance of
conserved His-263 and His-332 [4].
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Structural links
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Database links
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Publications
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1.
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Ollis DL, Cheah E, Cygler M, Dijkstra B, Frolow F, Franken SM, Harel M, Remington SJ, Silman I, Schrag J.
The alpha/beta hydrolase fold.
Protein Eng. 5 197-211 1992
[PubMed: 1409539]
http://dx.doi.org/10.1093/protein/5.3.197
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2.
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Beetham JK, Grant D, Arand M, Garbarino J, Kiyosue T, Pinot F, Oesch F, Belknap WR, Shinozaki K, Hammock BD.
Gene evolution of epoxide hydrolases and recommended nomenclature.
DNA Cell Biol. 14 61-71 1995
[PubMed: 7832993]
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3.
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Verschueren KH, Seljee F, Rozeboom HJ, Kalk KH, Dijkstra BW.
Crystallographic analysis of the catalytic mechanism of haloalkane dehalogenase.
Nature 363 693-8 1993
[PubMed: 8515812]
http://dx.doi.org/10.1038/363693a0
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4.
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Pinot F, Grant DF, Beetham JK, Parker AG, Borhan B, Landt S, Jones AD, Hammock BD.
Molecular and biochemical evidence for the involvement of the Asp-333-His-523 pair in the catalytic mechanism of soluble epoxide hydrolase.
J. Biol. Chem. 270 7968-74 1995
[PubMed: 7713895]
http://dx.doi.org/10.1074/jbc.270.14.7968
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Additional Reading
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Liu X, Hanson BL, Langan P, Viola RE.
The effect of deuteration on protein structure: a high-resolution comparison of hydrogenous and perdeuterated haloalkane dehalogenase.
Acta Crystallogr. D Biol. Crystallogr. 63 2007 1000-8
[PubMed: 17704569]
http://dx.doi.org/10.1107/S0907444907037705
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Mazumdar PA, Hulecki JC, Cherney MM, Garen CR, James MN.
X-ray crystal structure of Mycobacterium tuberculosis haloalkane dehalogenase Rv2579.
Biochim. Biophys. Acta 1784 2008 351-62
[PubMed: 18062934]
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Horsman GP, Bhowmik S, Seah SY, Kumar P, Bolin JT, Eltis LD.
The tautomeric half-reaction of BphD, a C-C bond hydrolase. Kinetic and structural evidence supporting a key role for histidine 265 of the catalytic triad.
J. Biol. Chem. 282 2007 19894-904
[PubMed: 17442675]
http://dx.doi.org/10.1074/jbc.M702237200
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Monincova M, Prokop Z, Vevodova J, Nagata Y, Damborsky J.
Weak activity of haloalkane dehalogenase LinB with 1,2,3-trichloropropane revealed by X-Ray crystallography and microcalorimetry.
Appl. Environ. Microbiol. 73 2007 2005-8
[PubMed: 17259360]
http://dx.doi.org/10.1128/AEM.02416-06
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Loening AM, Fenn TD, Gambhir SS.
Crystal structures of the luciferase and green fluorescent protein from Renilla reniformis.
J. Mol. Biol. 374 2007 1017-28
[PubMed: 17980388]
http://dx.doi.org/10.1016/j.jmb.2007.09.078
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InterPro 23.1
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