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InterPro: IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal

Protein matchesHelp
UniProtKB
Matches:
1629 proteins
AccessionHelp IPR000627 Intradiol_dOase_C
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit
IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit
IPR012800 Catechol 1,2-dioxygenase, actinobacteria
IPR012801 Catechol 1,2-dioxygenase, proteobacteria
IPR012817 Chlorocatechol 1,2-dioxygenase
IPR015889 Intradiol ring-cleavage dioxygenase, core
GO Term annotationHelp
Process GO:0006725 cellular aromatic compound metabolic process
GO:0055114 oxidation reduction
Function GO:0003824 catalytic activity
GO:0008199 ferric iron binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [1]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues.

Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (EC:1.13.11.1); protocatechuate 3,4-dioxygenase (3,4-PCD) (EC:1.13.11.3); and chlorocatechol 1,2-dioxygenase (EC:1.13.11.1) [2].

Structural linksHelp
PDB - click here
SCOP: b.3.6.1
CATH: 2.60.130.10
Database linksHelp
PDBe-motif: PS00083
Enzyme: EC:1.13.11
PROSITE doc: PDOC00079
PANDIT: PF00775
Blocks: IPB000627
COMe: PRX000125
Pfam Clan: CL0287.3

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR000627 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O67987 Chlorocatechol 1,2-dioxygenase

P86029 Catechol 1,2-dioxygenase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR012817 Chlorocatechol 1,2-dioxygenase
IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal
IPR015889 Intradiol ring-cleavage dioxygenase, core
IPR007535 Catechol dioxygenase, N-terminal
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain

PublicationsHelp
1. Broderick JB.
Catechol dioxygenases.
Essays Biochem. 34 173-89 1999 [PubMed: 10730195]
2. Ferraroni M, Solyanikova IP, Kolomytseva MP, Scozzafava A, Golovleva L, Briganti F.
Crystal structure of 4-chlorocatechol 1,2-dioxygenase from the chlorophenol-utilizing gram-positive Rhodococcus opacus 1CP.
J. Biol. Chem. 279 27646-55 2004 [PubMed: 15060064]
http://dx.doi.org/10.1074/jbc.M401692200

Additional ReadingHelp
Ohlendorf DH, Lipscomb JD, Weber PC.
Structure and assembly of protocatechuate 3,4-dioxygenase.
Nature 336 1988 403-5 [PubMed: 3194022]
http://dx.doi.org/10.1038/336403a0
Harayama S, Rekik M.
Bacterial aromatic ring-cleavage enzymes are classified into two different gene families.
J. Biol. Chem. 264 1989 15328-33 [PubMed: 2670937]
http://intl.jbc.org/cgi/reprint/264/26/15328.pdf
Vetting MW, D'Argenio DA, Ornston LN, Ohlendorf DH.
Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase.
Biochemistry 39 2000 7943-55 [PubMed: 10891075]
http://dx.doi.org/10.1021/bi000151e
Vetting MW, Ohlendorf DH.
The 1.8 A crystal structure of catechol 1,2-dioxygenase reveals a novel hydrophobic helical zipper as a subunit linker.
Structure 8 2000 429-40 [PubMed: 10801478]
http://dx.doi.org/10.1016/S0969-2126(00)00122-2
Brown CK, Vetting MW, Earhart CA, Ohlendorf DH.
Biophysical analyses of designed and selected mutants of protocatechuate 3,4-dioxygenase1.
Annu. Rev. Microbiol. 58 2004 555-85 [PubMed: 15487948]
http://dx.doi.org/10.1146/annurev.micro.57.030502.090927
Valley MP, Brown CK, Burk DL, Vetting MW, Ohlendorf DH, Lipscomb JD.
Roles of the equatorial tyrosyl iron ligand of protocatechuate 3,4-dioxygenase in catalysis.
Biochemistry 44 2005 11024-39 [PubMed: 16101286]
http://dx.doi.org/10.1021/bi050902i
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InterPro 23.1