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InterPro: IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal
Protein matches
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UniProtKB Matches: 1629 proteins |
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Accession
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IPR000627 Intradiol_dOase_C |
Type
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Domain |
Signatures
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InterPro Relationships
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Found in
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IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit
IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit
IPR012800 Catechol 1,2-dioxygenase, actinobacteria
IPR012801 Catechol 1,2-dioxygenase, proteobacteria
IPR012817 Chlorocatechol 1,2-dioxygenase
IPR015889 Intradiol ring-cleavage dioxygenase, core
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GO Term annotation
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Process
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GO:0006725 cellular aromatic compound metabolic process
GO:0055114 oxidation reduction
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Function
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GO:0003824 catalytic activity
GO:0008199 ferric iron binding
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InterPro annotation
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Entry Details in BioMart
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Abstract
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This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [1]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues.
Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (EC:1.13.11.1); protocatechuate 3,4-dioxygenase (3,4-PCD) (EC:1.13.11.3); and chlorocatechol 1,2-dioxygenase (EC:1.13.11.1) [2].
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Structural links
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Database links
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Pfam Clan: CL0287.3
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Additional Reading
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Ohlendorf DH, Lipscomb JD, Weber PC.
Structure and assembly of protocatechuate 3,4-dioxygenase.
Nature 336 1988 403-5
[PubMed: 3194022]
http://dx.doi.org/10.1038/336403a0
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Harayama S, Rekik M.
Bacterial aromatic ring-cleavage enzymes are classified into two different gene families.
J. Biol. Chem. 264 1989 15328-33
[PubMed: 2670937]
http://intl.jbc.org/cgi/reprint/264/26/15328.pdf
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Vetting MW, D'Argenio DA, Ornston LN, Ohlendorf DH.
Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase.
Biochemistry 39 2000 7943-55
[PubMed: 10891075]
http://dx.doi.org/10.1021/bi000151e
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Vetting MW, Ohlendorf DH.
The 1.8 A crystal structure of catechol 1,2-dioxygenase reveals a novel hydrophobic helical zipper as a subunit linker.
Structure 8 2000 429-40
[PubMed: 10801478]
http://dx.doi.org/10.1016/S0969-2126(00)00122-2
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Brown CK, Vetting MW, Earhart CA, Ohlendorf DH.
Biophysical analyses of designed and selected mutants of protocatechuate 3,4-dioxygenase1.
Annu. Rev. Microbiol. 58 2004 555-85
[PubMed: 15487948]
http://dx.doi.org/10.1146/annurev.micro.57.030502.090927
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Valley MP, Brown CK, Burk DL, Vetting MW, Ohlendorf DH, Lipscomb JD.
Roles of the equatorial tyrosyl iron ligand of protocatechuate 3,4-dioxygenase in catalysis.
Biochemistry 44 2005 11024-39
[PubMed: 16101286]
http://dx.doi.org/10.1021/bi050902i
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InterPro 23.1
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