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InterPro: IPR000602 Glycoside hydrolase, family 38, core

Protein matchesHelp
UniProtKB
Matches:
961 proteins
AccessionHelp IPR000602 Glyco_hydro_38_core
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel
GO Term annotationHelp
Process GO:0005975 carbohydrate metabolic process
Function GO:0004559 alpha-mannosidase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

O-Glycosyl hydrolases EC:3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [1, 2, 3]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site [4]. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in clans.

Glycoside hydrolase family 38 GH38 comprises enzymes with only one known activity; alpha-mannosidase (EC:3.2.1.24) (EC:3.2.1.114).

Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.

Structural linksHelp
PDB - click here
SCOP: c.6.2.1
CATH: 3.20.110.10
Database linksHelp
Enzyme: EC:3.2.1
CAZy: GH38
PANDIT: PF01074
Blocks: IPB000602
Pfam Clan: CL0158.8

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR000602 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O00754 Lysosomal alpha-mannosidase

O09159 Lysosomal alpha-mannosidase

P09961 Alpha-amylase 1

P22855 Alpha-mannosidase

Q24451 Alpha-mannosidase 2

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR004300 Glycoside hydrolase, family 57, core
IPR013780 Glycosyl hydrolase, family 13, all-beta
IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel
IPR011013 Glycoside hydrolase-type carbohydrate-binding
IPR015178 Domain of unknown function DUF1925
IPR011682 Glycosyl hydrolases 38, C-terminal
IPR015179 Alpha-amylase/4-alpha-glucanotransferase, prokaryotic
IPR015341 Glycoside hydrolase, family 38, central domain
IPR000602 Glycoside hydrolase, family 38, core
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G.
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases.
Proc. Natl. Acad. Sci. U.S.A. 92 7090-4 1995 [PubMed: 7624375]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=7624375&action=stream&blobtype=pdf
2. Davies G, Henrissat B.
Structures and mechanisms of glycosyl hydrolases.
Structure 3 853-9 1995 [PubMed: 8535779]
http://dx.doi.org/10.1016/S0969-2126(01)00220-9
3. Bairoch A.
Classification of glycosyl hydrolase families and index of glycosyl hydrolase entries in SWISS-PROT.
1999
4. Henrissat B, Coutinho PM.
Carbohydrate-Active Enzymes server.
1999

Additional ReadingHelp
Kuntz DA, Tarling CA, Withers SG, Rose DR.
Structural analysis of Golgi alpha-mannosidase II inhibitors identified from a focused glycosidase inhibitor screen.
Biochemistry 47 2008 10058-68 [PubMed: 18759458]
http://dx.doi.org/10.1021/bi8010785
Zhong W, Kuntz DA, Ember B, Singh H, Moremen KW, Rose DR, Boons GJ.
Probing the substrate specificity of Golgi alpha-mannosidase II by use of synthetic oligosaccharides and a catalytic nucleophile mutant.
J. Am. Chem. Soc. 130 2008 8975-83 [PubMed: 18558690]
http://dx.doi.org/10.1021/ja711248y
Kumar NS, Kuntz DA, Wen X, Pinto BM, Rose DR.
Binding of sulfonium-ion analogues of di-epi-swainsonine and 8-epi-lentiginosine to Drosophila Golgi alpha-mannosidase II: the role of water in inhibitor binding.
Proteins 71 2008 1484-96 [PubMed: 18076078]
http://dx.doi.org/10.1002/prot.21850
Henrissat B.
Glycosidase families.
Biochem. Soc. Trans. 26 1998 153-6 [PubMed: 9649738]
http://www.biochemsoctrans.org/bst/026/0153/0260153.pdf
Shah N, Kuntz DA, Rose DR.
Golgi alpha-mannosidase II cleaves two sugars sequentially in the same catalytic site.
Proc. Natl. Acad. Sci. U.S.A. 105 2008 9570-5 [PubMed: 18599462]
http://dx.doi.org/10.1073/pnas.0802206105
Fiaux H, Kuntz DA, Hoffman D, Janzer RC, Gerber-Lemaire S, Rose DR, Juillerat-Jeanneret L.
Functionalized pyrrolidine inhibitors of human type II alpha-mannosidases as anti-cancer agents: optimizing the fit to the active site.
Bioorg. Med. Chem. 16 2008 7337-46 [PubMed: 18599296]
http://dx.doi.org/10.1016/j.bmc.2008.06.021
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InterPro 23.1