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InterPro: IPR000602 Glycoside hydrolase, family 38, core
Protein matches
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UniProtKB Matches: 961 proteins |
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Accession
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IPR000602 Glyco_hydro_38_core |
Type
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Domain |
Signatures
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InterPro Relationships
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Parent
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IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel
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GO Term annotation
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Process
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GO:0005975 carbohydrate metabolic process
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Function
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GO:0004559 alpha-mannosidase activity
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InterPro annotation
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Entry Details in BioMart
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Abstract
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O-Glycosyl hydrolases EC:3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [1, 2, 3]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site [4]. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in clans.
Glycoside hydrolase family 38 GH38 comprises enzymes with only one known activity; alpha-mannosidase (EC:3.2.1.24) (EC:3.2.1.114).
Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.
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Structural links
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Database links
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Pfam Clan: CL0158.8
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Example proteins
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O00754 Lysosomal alpha-mannosidase
O09159 Lysosomal alpha-mannosidase
P09961 Alpha-amylase 1
P22855 Alpha-mannosidase
Q24451 Alpha-mannosidase 2
More proteins
Example Proteins Key
| InterPro entry accession number/name and structure databases |
Colour code |
| IPR004300 |
Glycoside hydrolase, family 57, core |
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| IPR013780 |
Glycosyl hydrolase, family 13, all-beta |
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| IPR011330 |
Glycoside hydrolase/deacetylase, beta/alpha-barrel |
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| IPR011013 |
Glycoside hydrolase-type carbohydrate-binding |
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| IPR015178 |
Domain of unknown function DUF1925 |
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| IPR011682 |
Glycosyl hydrolases 38, C-terminal |
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| IPR015179 |
Alpha-amylase/4-alpha-glucanotransferase, prokaryotic |
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| IPR015341 |
Glycoside hydrolase, family 38, central domain |
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| IPR000602 |
Glycoside hydrolase, family 38, core |
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PDB Chain |
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ModBase |
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CATH Domain |
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SWISS-MODEL |
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SCOP Domain |
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Additional Reading
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Kuntz DA, Tarling CA, Withers SG, Rose DR.
Structural analysis of Golgi alpha-mannosidase II inhibitors identified from a focused glycosidase inhibitor screen.
Biochemistry 47 2008 10058-68
[PubMed: 18759458]
http://dx.doi.org/10.1021/bi8010785
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Zhong W, Kuntz DA, Ember B, Singh H, Moremen KW, Rose DR, Boons GJ.
Probing the substrate specificity of Golgi alpha-mannosidase II by use of synthetic oligosaccharides and a catalytic nucleophile mutant.
J. Am. Chem. Soc. 130 2008 8975-83
[PubMed: 18558690]
http://dx.doi.org/10.1021/ja711248y
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Kumar NS, Kuntz DA, Wen X, Pinto BM, Rose DR.
Binding of sulfonium-ion analogues of di-epi-swainsonine and 8-epi-lentiginosine to Drosophila Golgi alpha-mannosidase II: the role of water in inhibitor binding.
Proteins 71 2008 1484-96
[PubMed: 18076078]
http://dx.doi.org/10.1002/prot.21850
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Henrissat B.
Glycosidase families.
Biochem. Soc. Trans. 26 1998 153-6
[PubMed: 9649738]
http://www.biochemsoctrans.org/bst/026/0153/0260153.pdf
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Shah N, Kuntz DA, Rose DR.
Golgi alpha-mannosidase II cleaves two sugars sequentially in the same catalytic site.
Proc. Natl. Acad. Sci. U.S.A. 105 2008 9570-5
[PubMed: 18599462]
http://dx.doi.org/10.1073/pnas.0802206105
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Fiaux H, Kuntz DA, Hoffman D, Janzer RC, Gerber-Lemaire S, Rose DR, Juillerat-Jeanneret L.
Functionalized pyrrolidine inhibitors of human type II alpha-mannosidases as anti-cancer agents: optimizing the fit to the active site.
Bioorg. Med. Chem. 16 2008 7337-46
[PubMed: 18599296]
http://dx.doi.org/10.1016/j.bmc.2008.06.021
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InterPro 23.1
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