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InterPro: IPR000559 Formate-tetrahydrofolate ligase, FTHFS

Protein matchesHelp
UniProtKB
Matches:
1809 proteins
AccessionHelp IPR000559 Formate_THF_ligase
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Contains IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site
GO Term annotationHelp
Process GO:0009396 folic acid and derivative biosynthetic process
Function GO:0004329 formate-tetrahydrofolate ligase activity
GO:0005524 ATP binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Formate--tetrahydrofolate ligase (EC:6.3.4.3) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [1], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues [2].

The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [3].

Structural linksHelp
SCOP: c.37.1.10
Database linksHelp
PDBe-motif: PS00721 , PS00722
Enzyme: EC:6.3.4.3
PROSITE doc: PDOC00595
PANDIT: PF01268
Blocks: IPB000559

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR000559 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O96553 C-1-tetrahydrofolate synthase, cytoplasmic

P07245 C-1-tetrahydrofolate synthase, cytoplasmic

P11586 C-1-tetrahydrofolate synthase, cytoplasmic

Q3V3R1 Monofunctional C1-tetrahydrofolate synthase, mitochondrial

Q9SPK5 Formate--tetrahydrofolate ligase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR016040 NAD(P)-binding domain
IPR000559 Formate-tetrahydrofolate ligase, FTHFS
IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase
IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site
IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site
IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. Shannon KW, Rabinowitz JC.
Isolation and characterization of the Saccharomyces cerevisiae MIS1 gene encoding mitochondrial C1-tetrahydrofolate synthase.
J. Biol. Chem. 263 7717-25 1988 [PubMed: 2836393]
http://intl.jbc.org/cgi/reprint/263/16/7717.pdf
2. Lovell CR, Przybyla A, Ljungdahl LG.
Primary structure of the thermostable formyltetrahydrofolate synthetase from Clostridium thermoaceticum.
Biochemistry 29 5687-94 1990 [PubMed: 2200509]
http://dx.doi.org/10.1021/bi00476a007
3. Radfar R, Shin R, Sheldrick GM, Minor W, Lovell CR, Odom JD, Dunlap RB, Lebioda L.
The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica.
Biochemistry 39 3920-6 2000 [PubMed: 10747779]
http://dx.doi.org/10.1021/bi992790z

Additional ReadingHelp
Radfar R, Leaphart A, Brewer JM, Minor W, Odom JD, Dunlap RB, Lovell CR, Lebioda L.
Cation binding and thermostability of FTHFS monovalent cation binding sites and thermostability of N10-formyltetrahydrofolate synthetase from Moorella thermoacetica.
Biochemistry 39 2000 14481-6 [PubMed: 11087401]
http://dx.doi.org/10.1021/bi001577w
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InterPro 23.1