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InterPro: IPR000556 Glycoside hydrolase, 48F

Protein matchesHelp
UniProtKB
Matches:
90 proteins
AccessionHelp IPR000556 Glyco_hydro_48F
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR012341 Six-hairpin glycosidase
GO Term annotationHelp
Process GO:0005975 carbohydrate metabolic process
Function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

O-Glycosyl hydrolases EC:3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [1, 2, 3]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site [4]. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in clans.

Glycoside hydrolase family 48 GH48 comprises enzymes with several known activities; endoglucanase (EC:3.2.1.4); cellobiohydrolase (EC:3.2.1.91).

The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [5].

Structural linksHelp
SCOP: a.102.1.2
Database linksHelp
Enzyme: EC:3.2.1
CAZy: GH48
PANDIT: PF02011
Blocks: IPB000556
Pfam Clan: CL0059.11

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR000556 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P0C2S5 Endoglucanase SS

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR000556 Glycoside hydrolase, 48F
IPR012341 Six-hairpin glycosidase
IPR008928 Six-hairpin glycosidase-like
IPR016134 Cellulosome enzyme, dockerin type I
IPR002105 Cellulosome enzyme, dockerin type I, calcium-binding motif
IPR018242 Dockerin type 1
PDB Chain
ModBase
CATH Domain
SCOP Domain

PublicationsHelp
1. Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G.
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases.
Proc. Natl. Acad. Sci. U.S.A. 92 7090-4 1995 [PubMed: 7624375]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=7624375&action=stream&blobtype=pdf
2. Davies G, Henrissat B.
Structures and mechanisms of glycosyl hydrolases.
Structure 3 853-9 1995 [PubMed: 8535779]
http://dx.doi.org/10.1016/S0969-2126(01)00220-9
3. Bairoch A.
Classification of glycosyl hydrolase families and index of glycosyl hydrolase entries in SWISS-PROT.
1999
4. Henrissat B, Coutinho PM.
Carbohydrate-Active Enzymes server.
1999
5. Te'o VS, Saul DJ, Bergquist PL.
celA, another gene coding for a multidomain cellulase from the extreme thermophile Caldocellum saccharolyticum.
Appl. Microbiol. Biotechnol. 43 291-6 1995 [PubMed: 7612247]
http://dx.doi.org/10.1007/s002530050405

Additional ReadingHelp
Parsiegla G, Reverbel C, Tardif C, Driguez H, Haser R.
Structures of mutants of cellulase Cel48F of Clostridium cellulolyticum in complex with long hemithiocellooligosaccharides give rise to a new view of the substrate pathway during processive action.
J. Mol. Biol. 375 2008 499-510 [PubMed: 18035374]
http://dx.doi.org/10.1016/j.jmb.2007.10.039
Parsiegla G, Juy M, Reverbel-Leroy C, Tardif C, Belaich JP, Driguez H, Haser R.
The crystal structure of the processive endocellulase CelF of Clostridium cellulolyticum in complex with a thiooligosaccharide inhibitor at 2.0 A resolution.
EMBO J. 17 1998 5551-62 [PubMed: 9755156]
http://dx.doi.org/10.1093/emboj/17.19.5551
Guimaraes BG, Souchon H, Lytle BL, David Wu JH, Alzari PM.
The crystal structure and catalytic mechanism of cellobiohydrolase CelS, the major enzymatic component of the Clostridium thermocellum Cellulosome.
J. Mol. Biol. 320 2002 587-96 [PubMed: 12096911]
http://dx.doi.org/10.1016/S0022-2836(02)00497-7
Parsiegla G, Reverbel-Leroy C, Tardif C, Belaich JP, Driguez H, Haser R.
Crystal structures of the cellulase Cel48F in complex with inhibitors and substrates give insights into its processive action.
Biochemistry 39 2000 11238-46 [PubMed: 10985769]
http://dx.doi.org/10.1021/bi001139p
el Hassouni M, Henrissat B, Chippaux M, Barras F.
Nucleotide sequences of the arb genes, which control beta-glucoside utilization in Erwinia chrysanthemi: comparison with the Escherichia coli bgl operon and evidence for a new beta-glycohydrolase family including enzymes from eubacteria, archeabacteria, and humans.
J. Bacteriol. 174 1992 765-77 [PubMed: 1732212]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=1732212&action=stream&blobtype=pdf
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InterPro 23.1