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InterPro: IPR000421 Coagulation factor 5/8 type, C-terminal

Protein matchesHelp
UniProtKB
Matches:
3133 proteins
AccessionHelp IPR000421 Coagulation_factor_5/8-type_C
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR008979 Galactose-binding domain-like
Found in IPR012111 Hemolectin/hemocytin
IPR014648 Neuropilin
IPR014707 Coagulation factor VIII
IPR020742 Tyrosine-protein kinase, discoidin domain-containing receptor
GO Term annotationHelp
Process GO:0007155 cell adhesion
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [1, 2, 3] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells [4]. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [5, 6]. It forms an amphipathic alpha-helix, which binds to the membrane [7]. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [8, 9, 10]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 [10].

  +------------------------------------------------------------------------+
  |                                                               +-+      |
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  CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC

'C': conserved cysteine involved in a disulphide bond.
'c': cysteine involved in a disulphide bond in MFGM Q08431.
'x': any amino acid.
upper case letters: conserved residues.

Structural linksHelp
Database linksHelp
PDBe-motif: PS01285 , PS01286
PROSITE doc: PDOC00988
PANDIT: PF00754
Blocks: IPB000421
Pfam Clan: CL0202.7

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR000421 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O14786 Neuropilin-1

O35375 Neuropilin-2

P26831 Hyaluronoglucosaminidase

Q28107 Coagulation factor V

Q94887 Neurexin-4

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR003585 Neurexin/syndecan/glycophorin C
IPR001791 Laminin G
IPR016134 Cellulosome enzyme, dockerin type I
IPR000421 Coagulation factor 5/8 type, C-terminal
IPR011490 Extracellular matrix-binding protein, Ebh
IPR000998 MAM
IPR000859 CUB
IPR002355 Multicopper oxidase, copper-binding site
IPR006210 EGF-like
IPR011707 Multicopper oxidase, type 3
IPR011496 Beta-N-acetylglucosaminidase
IPR008979 Galactose-binding domain-like
IPR012680 Laminin G, subdomain 2
IPR008972 Cupredoxin
IPR009271 Coagulation factor V LSPD
IPR014648 Neuropilin
IPR013320 Concanavalin A-like lectin/glucanase, subgroup
IPR018247 EF-Hand 1, calcium-binding site
IPR000742 EGF-like, type 3
IPR008985 Concanavalin A-like lectin/glucanase
IPR006209 EGF
ModBase
SWISS-MODEL
PDB Chain
CATH Domain
SCOP Domain

PublicationsHelp
1. Kane WH, Davie EW.
Cloning of a cDNA coding for human factor V, a blood coagulation factor homologous to factor VIII and ceruloplasmin.
Proc. Natl. Acad. Sci. U.S.A. 83 6800-4 1986 [PubMed: 3092220]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=3092220&action=stream&blobtype=pdf
2. Johnson JD, Edman JC, Rutter WJ.
A receptor tyrosine kinase found in breast carcinoma cells has an extracellular discoidin I-like domain.
Proc. Natl. Acad. Sci. U.S.A. 90 5677-81 1993 [PubMed: 8390675]
http://ukpmc.ac.uk/articlerender.cgi?tool=EBI&pubmedid=8390675
3. Couto JR, Taylor MR, Godwin SG, Ceriani RL, Peterson JA.
Cloning and sequence analysis of human breast epithelial antigen BA46 reveals an RGD cell adhesion sequence presented on an epidermal growth factor-like domain.
DNA Cell Biol. 15 281-6 1996 [PubMed: 8639264]
4. Kane WH, Davie EW.
Blood coagulation factors V and VIII: structural and functional similarities and their relationship to hemorrhagic and thrombotic disorders.
Blood 71 539-55 1988 [PubMed: 3125864]
http://www.bloodjournal.org/cgi/content/abstract/71/3/539
5. Foster PA, Fulcher CA, Houghten RA, Zimmerman TS.
Synthetic factor VIII peptides with amino acid sequences contained within the C2 domain of factor VIII inhibit factor VIII binding to phosphatidylserine.
Blood 75 1999-2004 1990 [PubMed: 2110840]
http://www.bloodjournal.org/cgi/content/abstract/75/10/1999
6. Ortel TL, Quinn-Allen MA, Keller FG, Peterson JA, Larocca D, Kane WH.
Localization of functionally important epitopes within the second C-type domain of coagulation factor V using recombinant chimeras.
J. Biol. Chem. 269 15898-905 1994 [PubMed: 7515064]
http://intl.jbc.org/cgi/content/abstract/269/22/15898
7. Gilbert GE, Baleja JD.
Membrane-binding peptide from the C2 domain of factor VIII forms an amphipathic structure as determined by NMR spectroscopy.
Biochemistry 34 3022-31 1995 [PubMed: 7893714]
http://dx.doi.org/10.1021/bi00009a033
8. Xue J, Kalafatis M, Mann KG.
Determination of the disulfide bridges in factor Va light chain.
Biochemistry 32 5917-23 1993 [PubMed: 8504111]
http://dx.doi.org/10.1021/bi00073a026
9. McMullen BA, Fujikawa K, Davie EW, Hedner U, Ezban M.
Locations of disulfide bonds and free cysteines in the heavy and light chains of recombinant human factor VIII (antihemophilic factor A).
Protein Sci. 4 740-6 1995 [PubMed: 7613471]
http://www.proteinscience.org/cgi/content/abstract/4/4/740
10. Hvarregaard J, Andersen MH, Berglund L, Rasmussen JT, Petersen TE.
Characterization of glycoprotein PAS-6/7 from membranes of bovine milk fat globules.
Eur. J. Biochem. 240 628-36 1996 [PubMed: 8856064]
http://dx.doi.org/10.1111/j.1432-1033.1996.0628h.x

Additional ReadingHelp
Shao C, Novakovic VA, Head JF, Seaton BA, Gilbert GE.
Crystal structure of lactadherin C2 domain at 1.7A resolution with mutational and computational analyses of its membrane-binding motif.
J. Biol. Chem. 283 2008 7230-41 [PubMed: 18160406]
http://dx.doi.org/10.1074/jbc.M705195200
Baumgartner S, Hofmann K, Chiquet-Ehrismann R, Bucher P.
The discoidin domain family revisited: new members from prokaryotes and a homology-based fold prediction.
Protein Sci. 7 1998 1626-31 [PubMed: 9684896]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=9684896
Rogers MS, Hurtado-Guerrero R, Firbank SJ, Halcrow MA, Dooley DM, Phillips SE, Knowles PF, McPherson MJ.
Cross-link formation of the cysteine 228-tyrosine 272 catalytic cofactor of galactose oxidase does not require dioxygen.
Biochemistry 47 2008 10428-39 [PubMed: 18771294]
http://dx.doi.org/10.1021/bi8010835
Rogers MS, Tyler EM, Akyumani N, Kurtis CR, Spooner RK, Deacon SE, Tamber S, Firbank SJ, Mahmoud K, Knowles PF, Phillips SE, McPherson MJ, Dooley DM.
The stacking tryptophan of galactose oxidase: a second-coordination sphere residue that has profound effects on tyrosyl radical behavior and enzyme catalysis.
Biochemistry 46 2007 4606-18 [PubMed: 17385891]
http://dx.doi.org/10.1021/bi062139d
Ramelot TA, Raman S, Kuzin AP, Xiao R, Ma LC, Acton TB, Hunt JF, Montelione GT, Baker D, Kennedy MA.
Improving NMR protein structure quality by Rosetta refinement: a molecular replacement study.
Proteins 75 2009 147-67 [PubMed: 18816799]
http://dx.doi.org/10.1002/prot.22229
Lin L, Huai Q, Huang M, Furie B, Furie BC.
Crystal structure of the bovine lactadherin C2 domain, a membrane binding motif, shows similarity to the C2 domains of factor V and factor VIII.
J. Mol. Biol. 371 2007 717-24 [PubMed: 17583728]
http://dx.doi.org/10.1016/j.jmb.2007.05.054
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InterPro 23.1